Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq3 98.7 1e-15 seq15 89.7 8e-13 >seq5 Length=26133890 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || ||||||||||| ||||| || | || || || | ||| Sbjct 18099599 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 18099658 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 | || || || || || | || ||||| || ||||| || || || || ||| Sbjct 18099659 GTTACCATAGACAATGTCAAGGCAAGGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 18099718 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || |||||||| || ||| ||| ||||| |||||||||| Sbjct 18099719 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAC 18099778 Query 156003 AT 156004 || Sbjct 18099779 AT 18099780 Score = 95.1 bits (104), Expect = 2e-14 Identities = 131/182 (72%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | | || ||||||||||| || || || | || || || | ||| Sbjct 18099827 ATGCAAATATTTGTCAGGACTTTGACTGGAAAGAC-ATCACCCTGGAGGTGGAGGGTTCG 18099885 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || ||||| || ||||| || || || || ||| Sbjct 18099886 GATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 18099945 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || |||||||| || ||| ||| ||||| |||| |||||| Sbjct 18099946 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGAATATAAT 18100005 Query 156003 AT 156004 || Sbjct 18100006 AT 18100007 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || || | ||||| ||||| || | || || || | ||| Sbjct 18099371 ATGCAAATATTTGTTAAGACGCTGGCCGGAAAGACTATCACTCTTGAGGTGGAGGGTTCG 18099430 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || ||||| ||||| || || || |||||||| Sbjct 18099431 GATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGAACAG 18099490 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||| | |||||| || ||||| | |||||||| Sbjct 18099491 CAGAGGCTTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACTTTGGCTGATTATAAC 18099550 Query 156003 AT 156004 || Sbjct 18099551 AT 18099552 >seq3 Length=24358521 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || |||||||||||||||| ||| |||||||| | Sbjct 8722786 CAGGATAAGGAAGGCATCCCTCCTGACCAACAAAGATTGATTTTTGCTGGTAAGCAATTG 8722845 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| ||||| | ||||||||| | ||||||| ||| | |||||||| || | Sbjct 8722846 GAAGATGGTCGAACTCTTGCAGATTATA--ACATCCAAAAGGAGTCAACGCTTCACTTGG 8722903 Query 156031 TGTTAAG 156037 | || || Sbjct 8722904 TTTTGAG 8722910 >seq15 Length=715379 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||| || ||||| ||||| | ||||| ||| ||| Sbjct 547764 ATGCAGATCTTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 547823 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| || || || || || || || ||||| || Sbjct 547824 GATACTATTGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 547883 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||||||||| ||| || || | | || || || Sbjct 547884 CAGAGGTTGATCTTTGCAGGAAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTACAAC 547943 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || ||||| || ||| Sbjct 547944 AT-TCAAAAGGAGTCCACTCTTCACTTGGTG 547973 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || ||||| || || || ||| Sbjct 547992 ATGCAGATCTTTGTGAAGACTCTGACTGGCAAGACCATAACATTGGAGGTGGAGAGTTCG 548051 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || || ||||| |||||||| || Sbjct 548052 GATACAATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 548111 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||||||| || ||| || ||| | ||||||| || Sbjct 548112 CAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGGAGGACTCTTGCAGATTACAAC 548171 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 548172 ATTCAGAAGGAGTCTACCCTTCA 548194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731797312462400