Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12 114 3e-20 seq15 95.1 2e-14 seq8 87.8 4e-12 seq5 87.8 4e-12 seq3 87.8 4e-12 >seq12 Length=1121147 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | ||| | ||| | |||||| |||||||||||| | Sbjct 23768 ACCACCACGCAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTATAATCTGC 23827 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | ||||| ||||||||||| || ||||| || || ||||| Sbjct 23828 AAGGGTACGACCATCCTCAAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 23887 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || ||| ||| ||||| |||| || || || || Sbjct 23888 GATCCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 23947 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||||||||| || ||||| | || || | ||| |||||||| Sbjct 23948 CTCCAGAGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 23995 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || || || ||||| | ||| || ||| || ||||| Sbjct 24222 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 24281 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | || |||||||| ||||| || ||||| | ||||| ||||| || Sbjct 24282 GCAAGGGTCCTACCGTCCTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGG 24341 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || || || ||| || | ||| || || Sbjct 24342 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCA 24401 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| || |||| ||||| | || |||||||| Sbjct 24402 ACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 24451 >seq15 Length=715379 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | || || | || || || | ||| | ||| ||| || || || || || Sbjct 547993 ATCCCACCACGCAGTCGAAGCACCAAGTGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 547935 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || | | |||| || | || || || |||||||| || ||||| || || || Sbjct 547934 AGCAAGGGTCCTTCCATCCTCGAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGG 547875 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || || || || || || ||||| || |||||| |||| ||| || ||| Sbjct 547874 GGGAATACCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCAGAGCTTTC 547815 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| |||||||||||||| || || | ||||| | ||| |||||||| Sbjct 547814 CACTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | || || |||| || | || || ||||||||||| | || Sbjct 589768 GATGTTATAATCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCT 589827 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| || || || ||||| ||||| || ||||| ||| |||||| ||| | Sbjct 589828 CTGCTGATCGGGGGGAATGCCTTCCTTATCCTGAATTTTTGCTTTGACATTATCTATGGT 589887 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || | || || || || ||||| | ||| || | ||| || || Sbjct 589888 ATCCGAGCTCTCAACCTCCAAGGTTATCGTCTTCCCAGTAAGTGTCTTGACAAAGATTTG 589947 Query 192534 CATT 192537 |||| Sbjct 589948 CATT 589951 >seq8 Length=17249391 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| |||||||| ||||||||||| || ||||| Sbjct 7852794 GATGTTATAATCTGCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCT 7852735 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||| |||||||| || || ||||| ||||| || Sbjct 7852734 CTGCTGATCAGGAGGGATGCCTTCCTTATCCTG 7852702 >seq5 Length=26133890 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| | ||| | || | ||| || || | || || ||| ||||||||| Sbjct 18100281 ATACCACCTCGCAAACGGAGAACAAGATGCAAGGTGGATTCCTTCTGGATGTTATAATCA 18100222 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || |||||||| || | ||||| || |||| Sbjct 18100221 GCAAGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGCA 18100162 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || || || ||||| ||| | ||| || || Sbjct 18100161 GGGATTCCTTCTTTATCTTGAATCTTCGCCTTGACATTGTCTATGGTATCCGAACTCTCC 18100102 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| | || || ||||| || || || | |||||| ||||| Sbjct 18100101 ACCTCCAGAGTGA--GTCTTTCCAGTCAAAGTCTTGACAAATATTTGCAT 18100054 >seq3 Length=24358521 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| ||| || ||| ||||| || | Sbjct 750238 ACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTATAGTCGGC 750179 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | | |||| ||||| || |||||||||||||| || ||||| || || || || Sbjct 750178 CAGAGTCCTTCCATCCTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 750119 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| ||||| || || || || ||||| || | || || || || Sbjct 750118 AATACCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATTGTGTCCGAGCTCTCCAC 750059 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| ||||| || ||||| || || || | ||| |||||||| Sbjct 750058 CTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 750011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984377022161400