Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12 100 5e-16 seq3 91.5 3e-13 seq15 89.7 9e-13 seq960 86.0 1e-11 seq8 86.0 1e-11 seq5 86.0 1e-11 >seq12 Length=1121147 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||| | ||| | |||||| ||||||||||||| Sbjct 23768 ACCACCACGCAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTATAATCTGC 23827 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 23828 AAGGGTACGACCATCCTCAAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGG 23887 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| || ||| ||| ||||| ||||| || || || || Sbjct 23888 GATCCCCTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 23947 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || ||||| | || || | || |||||||| Sbjct 23948 CTCCAGAGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 23995 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || ||||| | ||| || || || ||||| Sbjct 24222 ATACCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCC 24281 Query 171900 GATAAAGATCGT-TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || | |||| |||||||| ||||| || || || | ||||| || || || Sbjct 24282 G-CAAGGGTCCTACCGTCCTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGG 24340 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || || ||||| || || || || ||| || ||||| || || Sbjct 24341 GGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTC 24400 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| || |||| ||||| | ||| |||||||| Sbjct 24401 AACCTCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 24451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | || || || ||||| | || || || || || || Sbjct 24450 ATACCACCTCTCAATCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCG 24509 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || |||||||| || || || ||||| || ||||| ||||| || Sbjct 24510 GCGAGGGTTCGGCCATCCTCCAATTGCTTTCCGGCGAAAATCAACCTCTGCTGGTCTGGG 24569 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || || || || || ||||| || || Sbjct 24570 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCG 24629 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||| || || |||| ||||||| ||| || ||||| Sbjct 24630 ACTTCTAGGGTTATGGTCTTCCCGGTTAGAGTTTTAACGAAGATTTGCAT 24679 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | ||| | || || || ||||| | || || ||||| || || Sbjct 24678 ATACCACCTCTCAATCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATATTGTAGTCG 24737 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||||||| || || || ||||| || ||||| ||||| || Sbjct 24738 GCAAGGGTGCGGCCATCCTCCAATTGCTTTCCGGCGAAAATCAACCTCTGCTGGTCTGGG 24797 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| ||||| || || || || ||||| || || Sbjct 24798 GGGATGCCCTCCTTGTCTTGGATTTTGGCCTTCACGTTGTCGATCGTATCAGAGCTCTCG 24857 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| || ||||| || || |||| ||||| | ||| |||||||| Sbjct 24858 ACCTCTAATGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 24907 >seq3 Length=24358521 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || || || || | || || || || | || | ||| || || |||| Sbjct 8722930 TCATAGTTCCTCCCCTCAGCCTCAAAACCAAGTGAAGCGTTGACTCCTTTTGGATGTTAT 8722871 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || ||| | || |||||||| |||||||||||||| ||||| ||||||| Sbjct 8722870 AATCTGCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGT 8722811 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 8722810 CAGGAGGGATGCCTTCCTTATCCTG 8722786 >seq15 Length=715379 Score = 89.7 bits (98), Expect = 9e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || || || | ||| | ||| || ||| || || || Sbjct 547993 ATCCCACCACGCAGTCGAAGCACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCA 547934 Query 171900 GATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | || | || ||| || || | || || || ||||| || || ||||| ||||| || Sbjct 547933 GC-AAGGGTCCTTCCATCCTCGAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCTGG 547875 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || || || || || ||||| || |||||| |||||||| || ||| Sbjct 547874 GGGAATACCCTCCTTGTCCTGGATTTTGGCCTTGACATTATCAATAGTATCAGAGCTTTC 547815 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||||||||| || || | ||||| | || |||||||| Sbjct 547814 CACTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAAGATCTGCAT 547764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || || |||||||| || ||||| ||||| || || || || || || Sbjct 589568 TCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTG 589627 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || ||||| ||||||||||| ||| ||||| | |||||| Sbjct 589628 TCCTGGATTTTGGCCTTCACATTGTCAATAGTATCTGAGCTTTCCACTTCCAAAGTAATT 589687 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| | || || ||||| Sbjct 589688 GTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 589722 >seq960 Length=1739 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || || |||||||| || ||||| ||||| || || || || || || Sbjct 1483 TCCTCCAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTG 1542 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || ||||| ||||||||||| ||| ||||| | |||||| Sbjct 1543 TCCTGGATTTTGGCCTTCACATTGTCAATAGTATCTGAGCTTTCCACTTCCAAAGTAATT 1602 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| | || || ||||| Sbjct 1603 GTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 1637 >seq8 Length=17249391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| | || ||| | || |||||||| |||||||||||||| |||||| Sbjct 7852793 ATGTTATAATCTGCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTC 7852734 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 || || ||||| || || ||||| ||||| || Sbjct 7852733 TGCTGATCAGGAGGGATGCCTTCCTTATCCTG 7852702 >seq5 Length=26133890 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | || | ||| ||||||| || || ||| ||||||||| Sbjct 18099828 ATCCCACCCCGCAATCGAAGAACAAGATGCAAAGTAGATTCCTTCTGAATGTTATAATCT 18099769 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || || | || || || |||||||| | || |||||||||||| Sbjct 18099768 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGT 18099709 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || | || ||||| ||| ||| | || || Sbjct 18099708 GGGATCCCTTCCTTGTCTTGAATCCTTGCCTTGACATTGTCTATGGTAACCGAACCCTCC 18099649 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || ||||| || || || | ||||| ||||| Sbjct 18099648 ACCTCCAGAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAATATTTGCAT 18099599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905043630871200