Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 136 1e-26 seq1 114 4e-20 seq8 102 2e-16 >seq4 Length=23934096 Score = 136 bits (150), Expect = 1e-26 Identities = 286/420 (68%), Gaps = 16/420 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | | ||||| || ||||| || || ||||||||| | Sbjct 21947719 TAAACCCATCCATTTCAGTAAGCAACTGATTGAGCGTTTGCTCTCTCTCATCATTT---C 21947775 Query 288998 CTCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATG 289053 ||| |||| | || | |||| | | | ||||||||||| || || |||||| Sbjct 21947776 CTC------CACCA-ATTCCTGTTCCTCTCTGCCTCCCAACAGCATCTATCTCATCAATG 21947828 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || || || ||||| | | || | ||||| || || || | || ||| Sbjct 21947829 AAAACCAAGCATGGGGAATTGGCTTTAGCCTTGTTGAATAAATCCCTCACTCTAGAAGCT 21947888 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | || ||| |||| |||| || || || | || | || ||| | || | Sbjct 21947889 CCTACTCCTACAAACATCTCTATGAACTCTGACCCTGACAGAGAAAAGAAAGGGACCCCT 21947948 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| ||||||| ||| | ||||| |||||||| || || |||||||| || |||| Sbjct 21947949 GCTTCTCCTGCTATGGCCTTGGCCAGCAGTGTCTTTCCAGTCCCAGGTGGCCCTACTAAA 21948008 Query 289234 AGAACTCCCTTTGGTACTT-TTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAA 289292 ||||| |||||||| | || |||| ||| ||| | | ||||| || | || || || Sbjct 21948009 AGAAC-CCCTTTGGGAATTCTTGCTCCAACAGCTGAAAACTTCTCTGGAGTTTTCAAGAA 21948067 Query 289293 TTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| ||||| || | | || | ||||| |||||| |||||||||||| |||| || Sbjct 21948068 TTCAACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACCCCTGCTACATCATCAAATGT 21948127 Score = 129 bits (142), Expect = 2e-24 Identities = 327/488 (67%), Gaps = 22/488 (5%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGT 288932 ||| || | ||| | || || || ||||| || ||||| | |||| ||| | || Sbjct 8567869 TAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATAC---CAGT 8567925 Query 288933 -TTGC--TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATC 288989 |||| | ||| |||||||| ||| |||| |||||||| |||||||| |||||||| Sbjct 8567926 GTTGCCCTCAAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATC 8567985 Query 288990 ATTTGAACCTCTTGAATCACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTT 289045 |||| || | |||| | || | |||| ||| |||||||||||||||| Sbjct 8567986 ATTT---CCCC------CACCA-ATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTT 8568035 Query 289046 CGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACAC 289105 | |||| || | | || || | ||| | | | || | ||| | || | || | Sbjct 8568036 CATCAACAAATACAATGCAAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTC 8568095 Query 289106 GGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAAT 289164 |||| || |||| ||||||| ||||||| ||||| |||||| | || | | || | ||| Sbjct 8568096 GGGAAGCACCAACACCAACAAACATTTCAACAAACTCAGAACCTGAGA-TGGAGAAAAAT 8568154 Query 289165 GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGT 289224 | ||| ||||| || || | |||| | || | || ||||| || ||||| || || Sbjct 8568155 GGAACACCAGCTTCACCAGCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGA 8568214 Query 289225 CCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTC 289284 || | | ||||| || || || | | |||||| ||| | | ||||||| || Sbjct 8568215 CCAACAAGAAGAACCCCTTTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTC 8568274 Query 289285 TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCA 289344 || || ||||| |||| ||| ||| || | || || ||||| || || |||||| Sbjct 8568275 TTCAAGAATTCCACAACCTCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATCA 8568334 Query 289345 GCAAAAGT 289352 |||| || Sbjct 8568335 TCAAATGT 8568342 >seq1 Length=26753024 Score = 114 bits (126), Expect = 4e-20 Identities = 218/316 (69%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | ||||| || | | Sbjct 20894712 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCGCACTGTCTTGCCTCTTGA 20894653 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| || || | |||| |||| ||||||| ||||||| | ||| || ||| | Sbjct 20894652 AATAAGCTTCGAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCTGAACCA 20894593 Query 289150 GATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 |||| | || ||| | || | | ||| ||||| |||| | || ||||| ||||| Sbjct 20894592 GATA-TAGATAGAAAAGGCACCCTAGATTCACCTGCAGTTGCCTTTGCAAGAAGCGTCTT 20894534 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 ||||||||||| || || | | ||| | || ||||| | |||||| |||| | || Sbjct 20894533 TCCTGTTCCAGGAGGGCCAACAAGAAGAGCACCTTTTGGAATTTTTGCTCCCAACTC-CT 20894475 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 ||||||| |||| |||||| ||| | |||| ||| | ||| | || ||||||| Sbjct 20894474 CGTATTTCTTAGGGTTCTTTAGAAAGTGCACAAACTCCATTATTTCTTGCTTAGCCTCAT 20894415 Query 289328 CACATCCTGCTACATC 289343 |||| || |||||||| Sbjct 20894414 CACAGCCAGCTACATC 20894399 Score = 102 bits (112), Expect = 2e-16 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||| ||||| ||| ||||| ||||| ||||| || | ||| || || | | Sbjct 12870846 TACCTTTCCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCA 12870905 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||| ||| ||||||||||| ||||| ||||| ||||||| || | | | Sbjct 12870906 ACATTGGAACAATGCCATTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCAC 12870965 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || |||| | | ||||| || || | | |||| || ||| ||||||| Sbjct 12870966 GAATGTTGTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCT 12871025 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||||| |||| |||||||| |||||||| ||| Sbjct 12871026 TCAAAGTATCATAAATGCCTTCAATGCTATCATCTTTCAT 12871065 >seq8 Length=17249391 Score = 102 bits (112), Expect = 2e-16 Identities = 228/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | |||||| || |||||| ||| | | | | Sbjct 12284463 ATTTCTGACAGTGCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 12284522 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || ||||| |||||| || || || ||||| || ||||| | | ||||| Sbjct 12284523 TTGAATGTACCCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTCCCACC 12284582 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || || ||| | | |||| | || || || Sbjct 12284583 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAACCCACGCAGGTAGGAATTTTCTACAAA 12284642 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || || || || ||||| |||| |||| || | | | Sbjct 12284643 TCCACGACTTTCTGGTCCATAATCATCTTTAGTGAAGTGGGGCAATGTCCGGTCTATGA- 12284701 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || || ||||||||||| || ||||| |||||||| |||| || | | ||||||| | Sbjct 12284702 ACCCATAAGGGATACGCTTACCCTCAACATTCTGCTGCCCCACACAAGCAGTCATCTGGG 12284761 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | || || | | ||| || ||||| || || | ||||| Sbjct 12284762 ATATGTTGATAAAACTCCCTTTGGACCCTGCTGTAACCAT 12284801 Score = 95.1 bits (104), Expect = 4e-14 Identities = 101/131 (77%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 ||||||||| |||| || || ||| || || |||||||| |||||||||||||||| Sbjct 12283737 GGGAACACCTAGGGTAACATTCT--TTGCACTCA-CACCAGCATAGTGGAAAGTATTCAG 12283793 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 || | ||||| | |||||||||||| ||| || |||| ||||| |||||| || Sbjct 12283794 TGTCATCTGAGTGGCAGGCTCACCAATAGATTGGGCAGCAACACAACCAATCATTTCGCC 12283853 Query 301950 TGGTGCTACAA 301960 |||||||||| Sbjct 12283854 AGGTGCTACAA 12283864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471663646039268