Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 203 4e-46 seq6 93.3 5e-13 seq8 91.5 2e-12 seq1 91.5 2e-12 seq3828 89.7 6e-12 seq139 89.7 6e-12 seq5 89.7 6e-12 >seq4 Length=23934096 Score = 203 bits (224), Expect = 4e-46 Identities = 223/294 (76%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | || ||| Sbjct 23380971 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAGACCTGG 23381030 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||||| ||||| || ||||| ||||||||||| ||| ||||| Sbjct 23381031 ACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCAGAGGCAGCGAAG 23381090 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| |||| ||||| |||| | | | || | |||| ||| Sbjct 23381091 AAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTTCCCAATGGCGT 23381150 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| || ||| || ||||||||||||||||||| || ||||||||||| |||||| Sbjct 23381151 AGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTAC 23381210 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||||||| | || | |||| |||| ||||| | ||| ||||||| ||||| Sbjct 23381211 ATCTCCCAGATTTCCGGGTATTGGATCGGGAACA-TACAGAAGCGGTCCGGGTT 23381263 Score = 120 bits (132), Expect = 4e-21 Identities = 219/318 (69%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | ||||||||| |||||||| |||| || |||| Sbjct 23380377 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAAAAATTGGTCTTCCCCTGCAGGCTGATC 23380436 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||||||||| || ||||| ||| || | || ||| | Sbjct 23380437 AGCTCCATCCAATCGAACGGGTTCTGCACATTGTAAATCTTCCCGTACCCAAGCTCACCC 23380496 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| | || || || |||||||||||||||| ||| || || ||||||| || | Sbjct 23380497 AGCAGCCTATCCGCCACGAACTCGATGTACTGGCTCATCAGATCGCCGTTCATTCCCACC 23380556 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||| | || |||| ||| |||||| |||| ||||| || || | ||| Sbjct 23380557 AGAGCGCACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCATTTCGTATG 23380616 Query 868931 ATCTGCCTGGGCACG-TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||| | || | || || | |||| || |||| || ||| |||| ||| || Sbjct 23380617 ATC-GACTTCACTCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACGC 23380675 Query 868990 AAAGTCGCAGTGCAACCC 869007 |||||||||||||| || Sbjct 23380676 GAAGTCGCAGTGCAAACC 23380693 Score = 107 bits (118), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 869216 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAA 869275 || || ||||| | ||||||||||| |||||||| || ||||| ||||| |||||||| Sbjct 23380728 AGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAG 23380787 Query 869276 AAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCC 869335 || || || || ||| |||||| | | || |||||| ||||| | || ||| Sbjct 23380788 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGAGCC---- 23380843 Query 869336 TTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 || |||||| | ||||| | |||||| || | || | || | || ||||| Sbjct 23380844 --GTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGATC 23380901 Query 869396 GCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| |||| || || ||| ||| ||| |||||||| ||||| || | ||||| Sbjct 23380902 GCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAG 23380957 >seq6 Length=21292200 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| ||||| ||| | ||| || ||||||| || Sbjct 5440061 GCTGCAAACTATCTGAACATCAAGAGCCTGCTGGATTTGACCTGCCAGACTGTGGCTGAC 5440120 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| |||||||||||||||||| || Sbjct 5440121 ATGATCAAGGGAAAGACACCAGAGGAGATTCGCAAGACCTTTAACATCCAG 5440171 Score = 93.3 bits (102), Expect = 5e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| ||||| ||| | ||| || ||||||| || Sbjct 5442195 GCTGCAAACTATCTGAACATCAAGAGCCTGCTGGATTTGACCTGCCAGACTGTGGCTGAC 5442254 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || |||||||| |||||||||||||||||| || Sbjct 5442255 ATGATCAAGGGAAAGACACCAGAGGAGATTCGCAAGACCTTTAACATCCAG 5442305 >seq8 Length=17249391 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | |||||||| ||||| || || ||| || |||| ||| || Sbjct 12390763 GCTGCAAACTACTTGAACATCAAGAGCCTGCTGGACCTGACATGCCAGACTGTTGCCGAC 12390704 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| | || ||||||||||| |||||||| || |||||| ||| Sbjct 12390703 ATGATCAAGGGGAAGACCCCGGAGGAGATCCGAAAGACCTTCAATATCAAGAACG 12390649 >seq1 Length=26753024 Score = 91.5 bits (100), Expect = 2e-12 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||| || || ||| ||| || ||| | || |||||||||||||| |||| || | Sbjct 21313042 TGGCTAGCTCACCGGGCAGGACCAGCCTGACCGCGGTCTGGATCTCCCGCGACGTAATGG 21313101 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGC-CGATGCGGTCGATCATG 1254464 || |||||| || | |||| || |||||| ||| ||| |||| ||| Sbjct 21313102 TGGGCTTCTTGTTGTAGCGAGCCAATCGTGAGGCCTCC-TGCGCGAGCTTCTCGAATATG 21313160 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||||| || |||||||| | ||| | |||| ||||||| || | ||||||||| Sbjct 21313161 TCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAGATCCCGATATCGGGGTGC 21313220 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 || ||||| || |||||| ||||| Sbjct 21313221 ACTTGCTTCAGGACCTTGAAGATG 21313244 >seq3828 Length=383 Score = 89.7 bits (98), Expect = 6e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || || ||||| || ||| | || || ||||| ||| | |||||| ||||| ||| | Sbjct 152 ACTCTGTTTGACTTAATCTTGGCTGCAAACTATCTCAATATCAAGAGCCTGCTGGATTTG 93 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 ||| || ||||||| ||||||||||||| ||| | || || |||||||| ||| | Sbjct 92 ACCTGCCAGACTGTGGCGGACATGATCAAGGGAAAGACACCTGAAGAGATCCGTGAGATC 33 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 32 TTCAACATCAAG 21 >seq139 Length=44703 Score = 89.7 bits (98), Expect = 6e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || || ||||| || ||| | || || ||||| ||| | |||||| ||||| ||| | Sbjct 27670 ACTCTGTTTGACTTAATCTTGGCTGCAAACTATCTCAATATCAAGAGCCTGCTGGATTTG 27729 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 ||| || ||||||| ||||||||||||| ||| | || || |||||||| ||| | Sbjct 27730 ACCTGCCAGACTGTGGCGGACATGATCAAGGGAAAGACACCTGAAGAGATCCGTGAGATC 27789 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 27790 TTCAACATCAAG 27801 >seq5 Length=26133890 Score = 89.7 bits (98), Expect = 6e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 || || ||||| || ||| | || || ||||| ||| | |||||| ||||| ||| | Sbjct 9919943 ACTCTGTTTGACTTAATCTTGGCTGCAAACTATCTCAATATCAAGAGCCTGCTGGATTTG 9919884 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 ||| || ||||||| ||||||||||||| ||| | || || |||||||| ||| | Sbjct 9919883 ACCTGCCAGACTGTGGCGGACATGATCAAGGGAAAGACACCTGAAGAGATCCGTGAGATC 9919824 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 9919823 TTCAACATCAAG 9919812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106469223927988