Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5 105 6e-18 seq960 84.2 2e-11 seq15 84.2 2e-11 >seq5 Length=26133890 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| ||||| || || || || || || | || |||| | Sbjct 18099599 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 18099658 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 | ||| | | | | || || | |||| ||||| ||||| | || || ||| Sbjct 18099659 GTTACCATAGACAATGTCAAGGCAAGGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 18099718 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||||| ||| || || ||||| ||||||| ||| || |||| ||||| ||| Sbjct 18099719 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAC 18099778 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||| ||||| Sbjct 18099779 ATTCAGAAGGAATCTACTTTGCA 18099801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||||| ||||| || || ||| ||| ||| | || |||| | Sbjct 18099827 ATGCAAATATTTGTCAGGACTTTGACTGG-AAAGACATCACCCTGGAGGTGGAGGGTTCG 18099885 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| ||||| | || || ||| Sbjct 18099886 GATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 18099945 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||||| ||| || || ||||| ||||||| ||| || |||| || || || Sbjct 18099946 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGAATATAAT 18100005 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || |||||||| ||||| Sbjct 18100006 ATCCAGAAGGAATCTACTTTGCA 18100028 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||||||||| ||||| || || || || | || | || |||| | Sbjct 18100054 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGAC--TCACTCTGGAGGTGGAGAGTTCG 18100111 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||||| || |||||||| | || | || || Sbjct 18100112 GATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTGCTGACCAG 18100171 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||||| ||| || || ||||| ||||||| || || | || ||||| ||| Sbjct 18100172 CAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAAC 18100231 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || ||||| || ||||| Sbjct 18100232 ATCCAGAAGGAATCCACCTTGCA 18100254 >seq960 Length=1739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| |||||||| || || || || ||||| | ||| ||| || | Sbjct 1637 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCA 1578 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | | || || || || ||||| || || | || || || Sbjct 1577 -GATACTATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCA 1519 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | |||| ||| || || ||||||||||||| || || | || || ||||| Sbjct 1518 GCAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAA 1459 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| || || || ||||| ||||| | | ||||| || || Sbjct 1458 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 1411 >seq15 Length=715379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| |||||||| || || || || ||||| | ||| ||| || | Sbjct 589722 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCA 589663 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | | || || || || ||||| || || | || || || Sbjct 589662 -GATACTATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCA 589604 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | |||| ||| || || ||||||||||||| || || | || || ||||| Sbjct 589603 GCAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAA 589544 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| || || || ||||| ||||| | | ||||| || || Sbjct 589543 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 589496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412800522776852