Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 174 2e-37 seq1 123 4e-22 seq6 87.8 3e-11 >seq4 Length=23934096 Score = 174 bits (192), Expect = 2e-37 Identities = 211/288 (73%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| | ||||||||||| |||||||| || || || ||||| |||||||| Sbjct 23380728 AGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAG 23380787 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 || || || || ||| |||||| | |||| |||||| ||||| | || ||| || Sbjct 23380788 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTCTGAGCCGTC- 23380846 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| | ||||||| ||||| || | || |||| | || ||||| Sbjct 23380847 -----GATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGATC 23380901 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 ||| |||| || || ||||||| ||| |||||||| |||||| || | ||||| | Sbjct 23380902 GCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGCTG 23380961 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 || |||| ||||||||||| |||||||||||||||||||| || ||| Sbjct 23380962 TACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 23381009 Score = 158 bits (174), Expect = 2e-32 Identities = 189/253 (75%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||| ||||||||||| | ||||| || ||||| ||||||||| Sbjct 23381016 GCCTCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCG 23381075 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||| ||||| |||||||| ||||| |||| ||||| |||| | | | || Sbjct 23381076 TCAGAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGA 23381135 Query 796270 GAGACCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 | |||| ||| ||| ||| || ||| || ||||||||||||||||| ||||| | Sbjct 23381136 GTTTCCCAATGG--CGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAG 23381193 Query 796328 CCTCGGCCTTTTTGTACATCTCCC--ATATCCGTTGGTAGCGGATGGGGAACAGAACAAA 796385 |||||||||| ||||||||||||| || |||| |||| |||| ||||||| | || Sbjct 23381194 CCTCGGCCTTCTTGTACATCTCCCAGATTTCCG--GGTATTGGATCGGGAACATACAGAA 23381251 Query 796386 GCGATTGGGGTTC 796398 ||| | |||||| Sbjct 23381252 GCGGTCCGGGTTC 23381264 >seq1 Length=26753024 Score = 123 bits (136), Expect = 4e-22 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| ||||| || |||||||| |||| || || ||| ||| || | Sbjct 21313005 TTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCTAGCTCACCGGGCAGGACC 21313064 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | || |||||||||||||| || | || ||| |||||| ||| ||| Sbjct 21313065 AGCCTGACCGCGGTCTGGATCTCCCGCGACGTAATGGTGGGCTTCTTGTTGTAGCGAGCC 21313124 Query 1485595 AGGCGGCCGGCCTCGGTGC-CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 | || |||||| ||| ||| |||| |||||||||| || ||||||||| Sbjct 21313125 AATCGTGAGGCCTC-CTGCGCGAGCTTCTCGAATATGTCGTTGATGAAGCTGTTCATGAT 21313183 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | ||| ||||||| || | ||||||||||| ||||| || |||||| Sbjct 21313184 CCCCATGGCCTTGCTGGAGATCCCGATATCGGGGTGCACTTGCTTCAGGACCTTG 21313238 >seq6 Length=21292200 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||| || |||||||| ||| || |||||| ||| |||| ||||| || Sbjct 5440061 GCTGCAAACTATCTGAACATCAAGAGCCTGCTGGATTTGACCTGCCAGACTGTGGCTGAC 5440120 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||| ||| | || ||||| || |||||||||||||||||| || Sbjct 5440121 ATGATCAAGGGAAAGACACCAGAGGAGATTCGCAAGACCTTTAACATCCAG 5440171 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||| || |||||||| ||| || |||||| ||| |||| ||||| || Sbjct 5442195 GCTGCAAACTATCTGAACATCAAGAGCCTGCTGGATTTGACCTGCCAGACTGTGGCTGAC 5442254 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||| ||| | || ||||| || |||||||||||||||||| || Sbjct 5442255 ATGATCAAGGGAAAGACACCAGAGGAGATTCGCAAGACCTTTAACATCCAG 5442305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915377958083996