Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 3e-14 seq15 91.5 1e-13 seq8 84.2 2e-11 seq5 82.4 6e-11 >seq12 Length=1121147 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || |||||| |||| || || ||||| ||| | ||| ||| ||| Sbjct 24679 ATGCAAATCTTCGTTAAAACTCTAACCGGGAAGACCATAACCCTAGAAGTCGAGAGCTCT 24620 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||| || || || ||| | ||| || || Sbjct 24619 -GATACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 24561 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| || || || || ||||||| | | ||| | || |||||||| Sbjct 24560 GCAGAGGTTGATTTTCGCCGGAAAGCAATTGGAGGATGGCCGAACCCTCGCCGACTACAA 24501 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||||||| || || |||||| |||| | ||||| |||| || Sbjct 24500 CATCCAAAAGGAATCGACTTTGCACTTGGTTCTCCGATTGAGAGGTGG 24453 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || |||||||| |||| || ||||| ||||| | || ||| ||| Sbjct 24451 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTTGAGAGCTC- 24393 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || ||||| || || || || | ||| ||||| Sbjct 24392 CGATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 24333 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | || ||||| || ||||||||| | || | ||||| ||||| Sbjct 24332 GCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAGGACGGTAGGACCCTTGCGGATTACAA 24273 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||||||||| || |||||| |||| || | || |||| || Sbjct 24272 CATCCAAAAGGAGTCAACTTTGCACTTGGTTCTGCGTCTGAGAGGTGG 24225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || |||||| |||| || || ||||| ||| | ||| ||| ||| Sbjct 44484 ATGCAAATCTTCGTTAAAACTCTAACCGGGAAGACCATAACCCTAGAAGTCGAGAGCTCT 44425 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||| || || || || | ||| ||||| Sbjct 44424 -GATACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCCGATCA 44366 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || || ||||||||| || ||| | | |||||||| Sbjct 44365 GCAGAGGCTCATCTTCGCCGGCAAGCAATTGGAGGACGGCAGAACCCTAGGCGACTACAA 44306 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || ||||| || || | ||| |||| || |||| |||||| Sbjct 44305 CATCCAGAAGGAATCAACTCTTCACTTGGTTCTGCGATT--GAGGGG 44261 >seq15 Length=715379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || || || || ||| | || ||| ||| Sbjct 589951 AATGCAAATCTTTGTCAAGACACTTACTGGGAAGACGATAACCTTGGAGGTTGAGAGCTC 589892 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 | ||||| | | | || ||| ||| ||| ||||| |||||| | ||| |||| Sbjct 589891 G-GATACCATAGATAATGTCAAAGCAAAAATTCAGGATAAGGAAGGCATTCCCCCCGATC 589833 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || || ||||| ||||| | | || | || || || | Sbjct 589832 AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCCGATTATA 589773 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||| |||||||| || || ||||| ||||| | | ||||| || || Sbjct 589772 ACATCCAAAAGGAATCAACTCTGCACCTGGTGCTTCGGTTGCGTGGTGG 589724 >seq8 Length=17249391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| |||||| | || |||||||||||| | |||| ||| ||||| || ||||| Sbjct 7852705 GATAAGGAAGGCATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGTAAGCAATTGGAG 7852764 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | ||| | || || || ||||| || |||||||| ||| | ||| |||| ||| Sbjct 7852765 GATGGCCGAACTCTTGCAGATTATAACATCCAGAAGGAGTCAACGCTTCACCTGGTTTTG 7852824 Query 107769 AGATTGCGAGGGGGAAATA 107787 || || | || |||| || Sbjct 7852825 AGGCTGAGGGGAGGAACTA 7852843 >seq5 Length=26133890 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| ||||| || || || || | || | || |||| | Sbjct 18100054 ATGCAAATATTTGTCAAGACTTTGACTGGAAAGAC--TCACTCTGGAGGTGGAGAGTTCG 18100111 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| ||||||||||| | || | || ||| Sbjct 18100112 GATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTGCTGACCAG 18100171 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| || || ||||| ||||| | | || | || || || ||| Sbjct 18100172 CAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAAC 18100231 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||| || || ||||| | || | | |||||||| || Sbjct 18100232 ATCCAGAAGGAATCCACCTTGCATCTTGTTCTCCGTTTGCGAGGTGG 18100278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398837112256996