Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq8164 558 1e-154 seq5 228 2e-55 seq7 163 8e-36 >seq8164 Length=157712 Score = 558 bits (618), Expect = 1e-154 Identities = 712/964 (74%), Gaps = 16/964 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1335 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1276 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| || || ||||| || |||||||| || || || Sbjct 1275 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAGTAGATATTGATGGTATTCGTGA 1217 Query 19651 ACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA 19709 ||| || || || | | || |||||||||||||| || || || || ||| | |||| | Sbjct 1216 ACCTGTTTCTGG-ATCTTTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTA 1158 Query 19710 GCA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGA 19767 | ||| || || || | ||||| ||||| || |||||||| ||| ||||||| Sbjct 1157 CCTCTGCA--GCTATAGGTTTGCACTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGA 1100 Query 19768 ATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--C 19825 |||| | |||||||| || || | |||| | || | |||||| | |||| | | Sbjct 1099 ATGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGC 1040 Query 19826 TATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATT 19885 | |||| ||||||| || |||||||||||||| | || || || ||| | ||||||||| Sbjct 1039 T-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 982 Query 19886 TGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTT 19944 |||||| || || ||||| |||||||| || |||| || ||||| | | || || | Sbjct 981 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATATATCCAAT 923 Query 19945 TGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACAT 20004 |||||| || ||||| || || | |||||| | || ||||| ||||| ||||||| ||| Sbjct 922 TGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAATCTCCGGTACTTTCAACTTCAT 863 Query 20005 GTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGC 20064 | | ||||||||||| || || ||||| || |||||||| || |||||| | || || || Sbjct 862 GATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGC 803 Query 20065 TGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCT 20124 |||||||||||| || || ||||||||||| ||||| || || |||| || || | | Sbjct 802 TGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTC-CTTGGTAACCTCTAGTT 744 Query 20125 TG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAG 20183 || | | || || || ||| | ||| | || | ||||||| || || ||||| | Sbjct 743 TGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGG 684 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 |||| |||||||| |||||||||||||||||||| ||||| || |||||||||||||| | Sbjct 683 AAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATG 624 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 || |||||||||| |||||| |||| |||||||| ||||| ||||| || ||||| | Sbjct 623 CTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTA 564 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363 | ||||| | || || || | || ||||| || || | || ||||| || || | Sbjct 563 TCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCA 504 Query 20364 ACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 20423 | || || | | || | | |||||||| ||| ||||||||||||| ||| | || | Sbjct 503 ATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGATATTATTAACC 444 Query 20424 GTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACC 20483 | ||||| || || | || || ||||||||||| ||||||||||| ||||| || || | Sbjct 443 GCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGATC 384 Query 20484 TTGC 20487 | || Sbjct 383 TAGC 380 >seq5 Length=26133890 Score = 228 bits (252), Expect = 2e-55 Identities = 246/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| || || ||||| ||||| |||||||| |||||||||||||||||||| ||| Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || |||||||||||||| ||| |||| ||||| |||||| |||| || ||||| Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| ||||| || ||||| || ||||| | || || || | || ||||| || Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 9071393 Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 || | || ||||| || || || || || | | || | | |||||||| ||| || Sbjct 9071394 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 9071453 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 | ||||||||| ||| | || || ||||| || || | || || ||||||||||| ||| Sbjct 9071454 AATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 9071513 Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487 |||||||| ||||| || || || || Sbjct 9071514 GCTCATAATTTCCCTCTAGATCTAGC 9071539 >seq7 Length=17044513 Score = 163 bits (180), Expect = 8e-36 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19832 TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTT 19891 |||||||| || |||||||||||||| | || || || ||| | ||||||||| |||| Sbjct 8091058 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTT 8090999 Query 19892 GCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAG 19951 || || || |||| |||||||| || |||| || ||| | | || || ||||||| Sbjct 8090998 GCATATTCAGCTCATGTTGCAGCTGCTACTGCTGTTTTTTTGATATATCCAATTGGTCAA 8090939 Query 19952 GGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTA 20011 || ||||| || |||| |||||| | || ||||| |||| ||||||| |||| | ||| Sbjct 8090938 GGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGTA 8090879 Query 20012 TTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 |||||||| || || ||||| || |||||||| || Sbjct 8090878 TTCCAAGCTGAGCACAACATCCTTATGCACCCATT 8090844 Score = 109 bits (120), Expect = 2e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTC 19949 ||| || || ||||| |||||||| || |||| || ||||| | | || || |||||| Sbjct 8087222 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATATATCCAATTGGTC 8087164 Query 19950 AGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGG 20009 | || ||||| || |||| |||||| | || ||||| |||| ||||||| |||| | | Sbjct 8087163 AAGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTG 8087104 Query 20010 TATTCCAAGCCGAACATAACATTCTCATGCAC 20041 |||||||||| || || ||||| || |||||| Sbjct 8087103 TATTCCAAGCTGAGCACAACATCCTTATGCAC 8087072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148814371419912