Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq8164 553 5e-153 seq5 248 3e-61 seq7 122 3e-23 >seq8164 Length=157712 Score = 553 bits (612), Expect = 5e-153 Identities = 707/963 (73%), Gaps = 12/963 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | | | | || || Sbjct 1335 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1276 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 1275 -TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCAGTAGATATTGATGGTATTCGTGA 1217 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| | | || ||||||||||| || || || || ||| | | || | Sbjct 1216 ACCTGTTTCTGGATCTTTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1157 Query 28839 CA--GCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| ||||| || |||||||| ||| |||||||| Sbjct 1156 CTCTGCA--GCTATAGGTTTGCACTTTTACCCGATATGGGAAGCGGCTTCCGTTGATGAA 1099 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CT 28954 ||| | |||||||| || || | |||| | || | |||||| | |||| || || Sbjct 1098 TGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1039 Query 28955 ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTT 29014 |||| ||||||| || |||||||||||||| | || || || ||| | || |||||| Sbjct 1038 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTG 981 Query 29015 GTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCG 29074 ||| ||||| |||||||| || ||||| || |||| |||||| | | || ||| | | Sbjct 980 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTG 921 Query 29075 GTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGC 29134 ||||||| ||| |||| ||||| | || || || || || ||||||| |||| Sbjct 920 GTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGGAATCTCCGGTACTTTCAACTTCATGA 861 Query 29135 TGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTG 29194 | || |||||||| || || ||||| || |||||||| || |||||| | ||||| |||| Sbjct 860 TTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTG 801 Query 29195 GAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG 29254 | || ||||| ||||| ||||| ||||| ||||| || || | || || || | | ||| Sbjct 800 GTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGGTCCTTGGTAACCTC-TAGTTTG 742 Query 29255 TGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAA 29313 | | || || || ||| | ||| || | ||||||| || || ||||| ||| Sbjct 741 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 682 Query 29314 GAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCT 29373 || || ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||| Sbjct 681 GAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 622 Query 29374 TCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATT 29433 |||||| ||| |||||| |||| |||||||| ||||| ||||| || ||||| || Sbjct 621 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 562 Query 29434 TGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAAC 29493 ||||| | || || || | || ||||| || || | || |||||||| || || Sbjct 561 TGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAAT 502 Query 29494 CAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGC 29553 || || | | || | | |||||||| |||||||||||||||||| || | || ||| Sbjct 501 CAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAATACTTGGGCTGATATTATTAACCGC 442 Query 29554 GCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTG 29613 |||||||| || | ||||| |||||||| |||||||||||||| ||||| || ||||| Sbjct 441 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTA 382 Query 29614 GCT 29616 ||| Sbjct 381 GCT 379 >seq5 Length=26133890 Score = 248 bits (274), Expect = 3e-61 Identities = 251/327 (77%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||| ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || |||||||||||||||||| |||| | ||| |||||| |||| || ||||| Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||| || ||||| | || || || | || ||||| || Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 9071393 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || | || |||||||| || || || || | | || | | |||||||| |||||| Sbjct 9071394 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 9071453 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 | |||||||||| || | || ||||||||||| || | ||||| |||||||| |||||| Sbjct 9071454 AATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 9071513 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| ||||| || ||||| ||| Sbjct 9071514 GCTCATAATTTCCCTCTAGATCTAGCT 9071540 >seq7 Length=17044513 Score = 122 bits (134), Expect = 3e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28960 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTC 29019 |||||||| || |||||||||||||| | || || || ||| | || |||||| ||| Sbjct 8091058 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTT 8090999 Query 29020 GCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAA 29079 ||||| ||||||| || ||||| || |||| ||||| | | || ||| | |||||| Sbjct 8090998 GCATATTCAGCTCATGTTGCAGCTGCTACTGCTGTTTTTTTGATATATCCAATTGGTCAA 8090939 Query 29080 GGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTG 29139 || ||| || | ||||| | || || || || | ||||||| |||| | || Sbjct 8090938 GGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGTA 8090879 Query 29140 TTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 |||||||| || || ||||| || |||||||| || Sbjct 8090878 TTCCAAGCTGAGCACAACATCCTTATGCACCCATT 8090844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146651381136744