Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq8164 625 9e-175 seq5 224 3e-54 seq7 187 7e-43 >seq8164 Length=157712 Score = 625 bits (692), Expect = 9e-175 Identities = 739/990 (75%), Gaps = 12/990 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 1362 TTTTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1303 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || |||||||| |||||||||||||| Sbjct 1302 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 1244 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || | | |||||||||||||| Sbjct 1243 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACAA 1184 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAGCA--GCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 1183 TATTATTTCTGGTGCCATTATTCCTACCTCTGCA--GCTATAGGTTTGCACTTTTACCCG 1126 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || |||||||| ||| ||||||||||| | |||||||| || || | |||| | Sbjct 1125 ATATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATT 1066 Query 19021 GTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078 || | |||||| | |||| || || |||| ||||||| || |||||||||||||| | Sbjct 1065 GTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTT 1008 Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138 || || || ||||||||||||||| |||||| || |||||||||||||| || || Sbjct 1007 TCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 948 Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 |||| || ||| | | |||||| |||||||||| |||| |||| |||||| | | Sbjct 947 CTGCTGTTTTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAG 888 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | || ||||| ||||||| |||| |||||||||| ||||| || |||||||| |||| Sbjct 887 GAATCTCCGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGC 828 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 |||| || |||||| | || || |||||||| |||||||| || ||||| ||||| |||| Sbjct 827 ACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGC 768 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAAC 19377 | || || |||| || || | ||| | | ||||| || ||| | | |||| || Sbjct 767 ATGGGTC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 709 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | || |||| || || ||||| ||||| || ||||| || || || |||||||| ||| Sbjct 708 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAT 649 Query 19438 TTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTT 19497 ||||| || | || ||||| || || ||||||||| |||||| |||||||||| Sbjct 648 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTC 589 Query 19498 TTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCA 19557 | |||||||||||||| || || || |||||| |||| | || | ||||| ||||| Sbjct 588 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCT 529 Query 19558 TTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATT 19617 |||||||| ||||| ||||| || || || || | |||| | | |||||||| ||| Sbjct 528 TTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATT 469 Query 19618 GATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGT 19677 ||||||||||||| ||| | || || |||||||| || | || || ||||| |||||| Sbjct 468 AATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGT 409 Query 19678 AATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||||||||| ||||| || ||| | ||| Sbjct 408 AATGCTCATAATTTCCCTCTAGATCTAGCT 379 >seq5 Length=26133890 Score = 224 bits (248), Expect = 3e-54 Identities = 246/327 (75%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || |||| || || ||||| ||||| || ||||| || || || |||||||| |||||| Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 || || | || ||||| || || ||| ||||| |||||| ||||||| || | Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 |||||||||||||| || || || |||||| |||| | || | ||||| ||||| ||| Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 9071393 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||||| ||||| ||||| || || || || | |||| | | |||||||| ||| || Sbjct 9071394 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 9071453 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 | ||||||||| ||| | || || |||||||| || | || || ||||| ||||||||| Sbjct 9071454 AATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 9071513 Query 19681 GCTCATAACTTCCCACTTGATTTGGCT 19707 |||||||| ||||| || ||| | ||| Sbjct 9071514 GCTCATAATTTCCCTCTAGATCTAGCT 9071540 >seq7 Length=17044513 Score = 187 bits (206), Expect = 7e-43 Identities = 369/543 (68%), Gaps = 45/543 (8%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| ||||| |||| || || || |||| |||||| || || |||||||| || Sbjct 8091342 TTTTGTAACTGGATAACTAGCACTGAAAACCATCTTTACATTGGATGGTTTGGTGTTTTG 8091283 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || |||||||| ||||||| |||||| Sbjct 8091282 ATGATCCCTACTTTATTGACCGCAACT-TATGTATTTATTATTGCTTTCATTGTTGCACC 8091224 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || | |||| | || | | |||||| ||||||| Sbjct 8091223 TCCAGTAGATATTGATGGTATTCGTGAACATGTTTCTGGATCTTTACTTTATAGAAACAA 8091164 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAAT 18962 || || || || ||| | |||| | | | || || || | ||| |||| Sbjct 8091163 TATTATTTCTGGTGCCATTATTCCTACCTCTATAGCTATAGGTTTGCACA------CAAT 8091110 Query 18963 TTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGT 19022 || || || ||| ||| | |||||| |||| ||||| || Sbjct 8091109 GGTGGTC-CTTATGAACT-----AATTGTTCTACA----------GTTCTTACTTG--GT 8091068 Query 19023 CTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCG 19082 || | || |||| ||||||| || |||||||||||||| | || Sbjct 8091067 -------------ATAG----CT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGTTTCCG 8091027 Query 19083 ACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGC 19142 || || ||||||||||||||| |||||| || ||||||| |||||| || || |||| Sbjct 8091026 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCATGTTGCAGCTGCTACTGC 8090967 Query 19143 GGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTAT 19202 || || | | |||||| |||||||||| |||| || | |||||| | || || Sbjct 8090966 TGTTTTTTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCCCTAGGAAT 8090907 Query 19203 TAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCC 19262 |||| ||||||| |||| |||||||||| ||||| || |||||||| |||||||| Sbjct 8090906 CTCCGGTATTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 8090847 Query 19263 GTT 19265 || Sbjct 8090846 ATT 8090844 Score = 105 bits (116), Expect = 2e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCA 19169 ||| || |||||||||||||| || || |||| || ||| | | |||||| ||||||| Sbjct 8087222 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTGGTCA 8087163 Query 19170 AGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGT 19229 ||| |||| || | |||||| | || || |||| ||||||| |||| |||| Sbjct 8087162 AGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGT 8087103 Query 19230 ATTCCAGGCTGAACATAACATCCTCATGCAC 19260 |||||| ||||| || |||||||| |||||| Sbjct 8087102 ATTCCAAGCTGAGCACAACATCCTTATGCAC 8087072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141135115976712