Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 280 2e-69 seq1 113 6e-19 >seq4 Length=23934096 Score = 280 bits (310), Expect = 2e-69 Identities = 396/547 (72%), Gaps = 16/547 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 |||||| ||||||| ||| ||||||| |||| |||| | || ||||| |||||| | Sbjct 23381263 AACCCGGACCGCTTCTGTA-TGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTAC-A 23381206 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC--ACGGT 1455850 | ||||||||||| ||||| ||||||||||||||||| || ||| || ||| ||| Sbjct 23381205 AGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGGTTGATCTCTGCCAGGACCTACG-- 23381148 Query 1455851 CCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 ||| |||| | || | | | |||| || ||||||| ||||| |||||||| || Sbjct 23381147 CCATTGGGAAACTCTAACCCCTGGCGAGAAGCACTTCATCACCCACGTGCTCGCCTTCTT 23381088 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||| ||| || |||||||| ||||| || ||||| | || ||||| || |||| Sbjct 23381087 -CGCTGCCTCTGACGGCATCGTTTTGGAGAATCTCGCCGGAAGGTTCATGAAGGAAGTCC 23381029 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 | | | ||||| || || ||||| ||||||||||||||||| ||||||||||| | Sbjct 23381028 AGGTCTCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCG 23380969 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | ||| ||||| | || |||||| |||||||| ||| ||||||| || || | Sbjct 23380968 AGATGTACAGCCTCCTTCTGGAGACCTACATCAAGGACTCGGACGAGAAGAACAGGCTTT 23380909 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 ||| ||| ||||| || | || | || | || |||||| | ||||| | |||| Sbjct 23380908 TTCACGCGATCGATACCATTCCCTGCGTCACCAAGAAGGCCCAGTGGGCCCTACGCTGGA 23380849 Query 1456151 TCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208 || || ||| || | ||||| |||||| |||| | |||||| |||| || | Sbjct 23380848 TC------GACGGCTCAGAATCGTTTGCGGAGCGGATCGTGGCCTTTGCTTGCGTGGAAG 23380795 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | || || |||||||| ||||| ||||| || |||||||| ||||||||||| | |||| Sbjct 23380794 GGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTTGGCTAAAGAAGCGCGGGTTAATGC 23380735 Query 1456269 CCGGTCT 1456275 | || || Sbjct 23380734 CGGGACT 23380728 >seq1 Length=26753024 Score = 113 bits (124), Expect = 6e-19 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||| || ||||| ||||||||| | || || ||| |||| |||| || Sbjct 21313243 ATCTTCAAGGTCCTGAAGCAAGTGCACCCCGATATCG---GG--ATC-TCCAGCAAGGCC 21313190 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| ||| ||| |||||| Sbjct 21313189 ATGGGGATCATGAACAGCTTCATCAACGACATATTCGAGAAGCTCGCGCAG-GAGGCCTC 21313131 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || |||| |||| ||||||| ||| || |||| |||||||||||||| || Sbjct 21313130 ACGATTGGCTCGCTACAACAAGAAGCCCACCATTACGTCGCGGGAGATCCAGACCGCGGT 21313071 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| || ||| ||| || || |||| |||||||| ||||||||||||| Sbjct 21313070 CAGGCTGGTCCTGCCCGGTGAGCTAGCCAAACACGCCGTTTCCGAGGGCACCA 21313018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177023767194568