Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq6 93.3 6e-14 seq4 93.3 6e-14 >seq1 Length=26753024 Score = 123 bits (136), Expect = 3e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | || || | |||| | |||| || ||| |||| ||| || Sbjct 12870862 TCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGGAACAATGCC 12870921 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||||||| |||||| || ||| | || ||||| || || ||| Sbjct 12870922 ATTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGA 12870981 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| ||| ||| ||| | |||||| ||||| || ||||| || Sbjct 12870982 GACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATAAAT 12871041 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||| || || || |||||| Sbjct 12871042 GCCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 >seq6 Length=21292200 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 |||||||| || || | | || |||| |||||||||| |||| | || |||||| Sbjct 18347201 TCATATTGGGTGTACAACTTCTCAAATTTTTCTCCCCAAAGATCAGCTAAGCCAGGAGCC 18347260 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 ||||||||||| | ||| ||||| |||||| | |||| || ||| || ||||| Sbjct 18347261 TCATTTGGACAAAACAAAGACCATTGCCCATCATTTTGGACTCTTTCCATGAAGAGATCA 18347320 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||||| ||||| ||| ||||||| | | || |||||| Sbjct 18347321 GGAATCCAGAGAGCATAAAATAGATCTCGAGCCCGATGTTCTTC 18347364 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||| || | || |||| || ||| ||||||| | || | || || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| | ||| || || || || || || || || | | || | |||||| Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTGTGTATACCAACAGAAACCCTCATCAA 18348250 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| || | ||| || | || | ||||| || || ||||| || | || || Sbjct 18348251 CATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTAG 18348310 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||||||| ||||| |||| || |||||||||||| ||||| || Sbjct 18348311 AGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 >seq4 Length=23934096 Score = 93.3 bits (102), Expect = 6e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || || | ||||||||||| || || ||||| || || || Sbjct 23380668 AAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGAACGTC 23380727 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 ||||| ||||||| || ||||| || ||||||||||| || |||||| | || || || Sbjct 23380728 AGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGC-GCAAAAACTCCCCGAGAA 23380786 Query 39733 GAAGATGCCTTCTAC 39747 ||| || ||||| || Sbjct 23380787 GAATATCCCTTCCAC 23380801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686838700956960