Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 109 7e-19 seq2 107 2e-18 >seq4 Length=23934096 Score = 109 bits (120), Expect = 7e-19 Identities = 303/462 (66%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTCA 11539 ||||| || || | | ||||| || |||| |||||||| ||||| | ||| Sbjct 8567879 TCAAGAATGTCTGCCCTGTTAGTCGCTGCAA---CCACAATGATACCAGTGTTGCCCTCA 8567935 Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | ||||||| ||||||||||| ||||||||| | | Sbjct 8567936 AAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCC---C 8567992 Query 11600 ATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 |||| |||| | | |||| || || |||||||| ||||||| || ||||| Sbjct 8567993 CCACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATG 8568052 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || ||| ||| || ||| | | ||| ||||| ||||| | ||||| |||||| Sbjct 8568053 CAAGGTGCATTCTCTTTGGCCTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 8568112 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 |||||||| || ||||| | | | ||| || ||||| ||| | |||||| Sbjct 8568113 ACAAACATTTCAACAAACTCAGAACCTGAGATGGAGAAAAATGGAACACCAGCTTCACCA 8568172 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 || || || || | || |||||||| || ||||| ||| | ||||| | ||| Sbjct 8568173 GCAATTGCCTTTGCTAACAGAGTCTTTCCAGTTCCTGGAGGACCAACAAGAAGAACCCCT 8568232 Query 11837 CGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATC 11896 || || || ||| || | ||||| || | ||| | || ||||||| | Sbjct 8568233 TTAGGAATTCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTCAAGAATTCCACAACC 8568292 Query 11897 TCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 || ||| || | ||||| | || | ||| |||||||| Sbjct 8568293 TCCACAAAATCCTGCTTGGCTTCATCTACCCCAGCAACATCA 8568334 >seq2 Length=42086771 Score = 107 bits (118), Expect = 2e-18 Identities = 218/319 (68%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||||||||||||||| || | | |||||||| || || || ||||||||||| | Sbjct 14879405 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCA-- 14879462 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | ||| | |||||||||||||||||||||||||| ||||| Sbjct 14879463 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATG 14879522 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | || || | || || || || |||||||| || Sbjct 14879523 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCC 14879581 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| ||||| || | || || | ||| || || || || | || || Sbjct 14879582 CACAAACAATTCCACGAACTCTGAAGCTGCGCAAGAGAAAAACGGCACCCCAGCCTCGCC 14879641 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || | ||| || || || |||||||| || ||||| || |||| | | ||| ||| Sbjct 14879642 GGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGTGGACCCACCAAAAGACAGCC 14879701 Query 11836 TCGGGGGATCTTGGCACCA 11854 | ||||| ||||| ||| Sbjct 14879702 TTTTGGGATTTTGGCTCCA 14879720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967909334400