Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 5e-14 seq4 89.7 6e-13 >seq2 Length=42086771 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| || Sbjct 14879405 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCCA-- 14879462 Query 14212 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | || ||| || | | ||| | || || || ||||| ||||| ||||| || || Sbjct 14879463 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATGAACACAATG 14879522 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || ||| || || | || ||||||||| ||||| || || Sbjct 14879523 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCC 14879581 Query 14329 CACAAACATCTCCACAAAAT-TG--GCGGCGGAACATTGGATGAAGGGGACGTTAGATTC 14385 |||||||| ||||| || | || || ||| || | || || || || || || Sbjct 14879582 CACAAACAATTCCACGAACTCTGAAGCTGCGCAAGA---GAAAAACGGCACCCCAGCCTC 14879638 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || || | ||| || || || |||||||| || || || ||| Sbjct 14879639 GCCGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGT 14879681 >seq4 Length=23934096 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/257 (68%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || || | ||| ||||| || | |||| ||| || || | | ||||| Sbjct 8567878 GTCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAA 8567937 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| || ||||| | ||||||||| | ||||||||| | | Sbjct 8567938 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCC---CCC 8567994 Query 14215 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| || | | | |||| || || || ||||||||||| | || || || || Sbjct 8567995 ACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 8568054 Query 14272 TGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 ||| ||| || ||| |||| ||| | ||| || |||| ||||| ||||| Sbjct 8568055 AGGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 8568112 Query 14330 ACAAACATCTCCACAAA 14346 |||||||| || ||||| Sbjct 8568113 ACAAACATTTCAACAAA 8568129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618372088687840