Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 >seq4 Length=23934096 Score = 150 bits (166), Expect = 2e-31 Identities = 557/854 (65%), Gaps = 18/854 (2%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||||| | |||| |||| ||||| || | ||| |||||| ||| ||||||| Sbjct 23381230 TACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAG 23381171 Query 59634 ATTGACCTC-GCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTT 59692 |||| ||| ||| | ||||| ||||||| | || | | |||| |||| || Sbjct 23381170 GTTGATCTCTGCCAG-GACCTACGCCATTGGGAAACTCTAACCCCTGGCGAGAAGCACTT 23381112 Query 59693 CATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGA 59752 ||||| || || ||||||||||| || ||| || || || |||| ||| | | Sbjct 23381111 CATCACCCACGTGCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTTTTGGAGAATCTCGC 23381052 Query 59753 CATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-T 59811 | | || ||||| |||||| | ||||||| || | ||||||| | ||| | Sbjct 23381051 CGGAAGGTTCATGAAGGAAGTCCAGGTCTCCGAGGCTCGCGCCTTCTACGGCTTCCAGAT 23380992 Query 59812 CGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGG 59871 || || |||| ||||||||||||| |||| ||| | | || | | |||||| Sbjct 23380991 CGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTTCTGGAGACCTACATCAAGG 23380933 Query 59872 ATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAA 59930 | |||| |||||| | || || | || || || || | ||| || || | | Sbjct 23380932 ACTCGGACGAGAAGAACAGGCTTTTTCACGCGATCGATACCATTCCCTGC-GTCACCAAG 23380874 Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCAT 59989 || || | |||||| | | ||||| || || || ||| ||||| | || || | Sbjct 23380873 AAGGCCCAGTGGGCCCTACGCTGGATCGACGGCTC-AGAATCGTTTGCGGAGCGGATCGT 23380815 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||||||||||| || |||||||| || || || || || || ||||| Sbjct 23380814 GGCCTTTGCTTGCGTGGAAGGGATATTCTTCTCGGGGAGTTTTTGCGCGATATTTTGGCT 23380755 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||||| || | |||||||| |||| ||||| |||||| |||| || | || || Sbjct 23380754 AAAGAAGCGCGGGTTAATGCCGGGACTGACGTTCTCAAACGAGTTGATCTCGAGAGATGA 23380695 Query 60110 GGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTATTCACACCTATTGGAAAAATGCCCTT 60168 ||| | || || || || ||| ||| || || | || |||| || | Sbjct 23380694 GGGTTTGCACTGCGACTTCGC-GTGCTTGCTGTACTCGCTGCT-GAGGAAGAA--GCTGA 23380639 Query 60169 CCAAGGATATTCACAAGATTGTTCAGTGGGCTT---GTGAAG-TGGAGAGCGAGTTCATC 60224 | ||||| ||| | | ||| | | ||| || | ||||| |||||| | Sbjct 23380638 GCGAGGATCGAGTGAAG-TCGATCATACGAAATGCGGTGGAGATAGAGAGAGAGTTCGTG 23380580 Query 60225 ACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATT 60284 |||||| | || ||| || | || ||| ||| | |||| |||||||| Sbjct 23380579 TGCGAAGCGTTACCGTGCGCTCTGGTGGGAATGAACGGCGATCTGATGAGCCAGTACATC 23380520 Query 60285 CAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAAT 60344 |||| || ||||| | || ||| || |||| | || |||||| ||| | Sbjct 23380519 GAGTTCGTGGCGGATAGGCTGCTGGGTGAGCTTGGGTACGGGAAGATTTACAATGTGCAG 23380460 Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||| ||||||||| ||| || | ||||||||||| || || |||||| Sbjct 23380459 AACCCGTTCGATTGGATGGAGCTGATCAGCCTGCAGGGGAAGACCAATTTTTTCGAGAAG 23380400 Query 60405 CGGGTCGGGGATTA 60418 |||| ||||| || Sbjct 23380399 AGGGTTGGGGAGTA 23380386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548468823044160