Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 136 4e-27 seq2 87.8 2e-12 seq8 86.0 7e-12 seq3 86.0 7e-12 >seq4 Length=23934096 Score = 136 bits (150), Expect = 4e-27 Identities = 535/823 (65%), Gaps = 40/823 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||| ||| || ||||| ||||||||||| | || ||| ||||||| Sbjct 23380386 TACTCCCCAACCCTCTTCTCGAAAAAATTGGTCTTCCCCTGCAGGCTGATCAGCTCCATC 23380445 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || ||||| ||||||| || |||||| |||| | ||||| || ||| || Sbjct 23380446 CAATCGAACGGGTTCTGCACATTGTAAAT---CTTCCCGTACCCAAGCTCACCCAGCAGC 23380502 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 | ||||||||| || | |||||||| |||| | | | ||| || | || | Sbjct 23380503 CTATCCGCCACGAACTCGATGTACTGGCTCATCAGATCGCCGTTCATTCCCACCAGAGCG 23380562 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 ||||| | || ||| | ||||| ||||| | ||| | | |||| || | Sbjct 23380563 CACGGTAACGCTTCGCACACGAACTCTCTCTCTATCTCC--ACCGCATT------TCGTA 23380614 Query 74700 TGAATGTCTT---TGGAA----GGGCA-CTTTTCCCTCAGGTGAGAGTAAAGCGT-CACG 74750 ||| | ||| | || | || ||| | |||||| | ||||| ||| |||| Sbjct 23380615 TGATCGACTTCACTCGATCCTCGCTCAGCTTCTTCCTCAGCAGCGAGTACAGCAAGCACG 23380674 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 | || || ||| | || |||||||| ||||| || || || |||| || || Sbjct 23380675 -CGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGAACGTCAGTCCC 23380733 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATG 74870 ||||| | || |||||||| | |||||| || || || || || |||||| || Sbjct 23380734 GGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAGAATATC 23380793 Query 74871 CCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCA 74929 ||||| || || |||||||| || | || | ||| |||| | | | | ||| ||||| Sbjct 23380794 CCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGATTC-TGAGCCGTCGATCCA 23380852 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGA 74988 | ||||| | || || |||| ||||||| | |||||||||| || || | Sbjct 23380853 GCGTAGGGCCCACTGGGCCTTCTTGGTGAC-GCAGGGAATGGTATCGATCGCGTGAAAAA 23380911 Query 74989 GGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCG 75048 | || |||||| || | ||||||| | | || | | || |||| |||| | Sbjct 23380912 GCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGCTGTACATCTCGG 23380971 Query 75049 AATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 | || || |||| || ||| |||| | ||||||| | || ||||| | | ||| Sbjct 23380972 AGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAGACCTGG 23381030 Query 75108 ACATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 || ||||| |||| | | | ||| |||||||| ||||||||||| ||||| |||| Sbjct 23381031 ACTTCCTTCATGAACCTTCC--GGCGAGATTCTCCAAAACGATGCCGTCAGAGGCAGCGA 23381088 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA---GTGAGTTTGTCCCAAT 75222 | || || || || |||| |||| ||| ||| || || || | ||||||| Sbjct 23381089 AGAAGGCGAGCACGTGGGTGATGAAGT---GCTTCTCGCCAGGGGTTAGAGTTTCCCAAT 23381145 Query 75223 CCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||||| | ||||| ||||||| | |||||||| Sbjct 23381146 GGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAA 23381188 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4802136 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4802077 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 4802076 TGAGCTATGAAAGC 4802063 >seq2 Length=42086771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10834278 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10834219 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 10834218 TGAGCTATGAAAGCA 10834204 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10834442 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10834383 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 10834382 TGAGCTATGAAAGCA 10834368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10834606 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10834547 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 10834546 TGAGCTATGAAAGCA 10834532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 16733242 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16733183 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 16733182 TGAGCTATGAAAGCAA 16733167 >seq8 Length=17249391 Score = 86.0 bits (94), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 124710 GACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTT 124769 ||||||||||||||||| || ||| ||||||| |||| |||||| | |||||| ||||| Sbjct 11483117 GACTCGTGGTTGAACAGTATCCCATTACACGCGAACAGCCCGTAGGCCTCGCGATAGTTG 11483176 Query 124770 TTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGG 124829 ||| ||||| | | | || || || | |||||| |||||||| || || Sbjct 11483177 ACCGTGTACCAATGCGCCGCGCATTTCGAAACAGCGTAGGGGGATCGGGGGTGAAACGGC 11483236 Query 124830 GTGTTTTCATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGA 124889 || | || ||| | |||| | || ||| ||||||||||| | || ||||| Sbjct 11483237 GTCGTCTCCGATTGCGGAGGT---GGGGTCGCCCCGAACATCTCCGACGAGCCGGCCTGG 11483293 Query 124890 TAGAATTT 124897 ||| |||| Sbjct 11483294 TAGTATTT 11483301 >seq3 Length=24358521 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 16633963 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16633904 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 16633903 TGAGCTACGAGAGC 16633890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 18693912 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18693971 Query 79684 TGAGCTACGAAAGC 79697 |||||||| | ||| Sbjct 18693972 TGAGCTACAAGAGC 18693985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547160156607200