Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq8164 524 9e-144 seq5 201 1e-46 seq7 176 5e-39 seq2 141 1e-28 seq3 82.4 9e-11 >seq8164 Length=157712 Score = 524 bits (580), Expect = 9e-144 Identities = 716/994 (72%), Gaps = 12/994 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 ||||| | ||| | |||| || | ||| | ||||| |||| ||||||||||| | Sbjct 1362 TTTTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1303 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 ||||| || | | | || || | | ||| ||||| |||| || ||||| ||||| Sbjct 1302 ATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACC 1244 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 || || ||||| || |||||||| ||||| || | |||||| |||| ||||||||||| Sbjct 1243 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACAA 1184 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 || || || || || | | || | ||| || || || | ||||| ||||| || Sbjct 1183 TATTATTTCTGGTGCCATTATTCCTACCTCTGCAGCTATAGGTTTGCACTTTTACCCGAT 1124 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | ||||| |||||| | ||||| || || || || |||| |||| Sbjct 1123 ATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTGT 1064 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAATGGGAACTTAGTTA 176468 | |||||| | | ||| | ||||| ||||||| || | ||||||||||||| Sbjct 1063 TCTACACTTCTTACTTGGTGT---AGCTTGCTACATGGGTCGTGAGTGGGAACTTAGTTT 1007 Query 176469 CAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGAT 176528 | | || || ||||| |||||||| ||||||||| || || || || | || || | Sbjct 1006 CCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 947 Query 176529 GGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGG 176588 || |||||| | | |||||| | ||||||||| || ||||| |||||||| || || Sbjct 946 TGCTGTTTTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGG 887 Query 176589 CATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCA 176648 || || ||||| |||||||| ||| ||||||||||||| ||||||||||| || ||||| Sbjct 886 AATCTCCGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 827 Query 176649 CCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCA 176708 |||||| || ||| | || ||||| ||||| || || || || || ||| || ||||| Sbjct 826 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 767 Query 176709 CGGAAGTC--TTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAAC 176766 || ||| | || || ||| | | || || || || ||||| ||||| || Sbjct 766 TGG--GTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 709 Query 176767 TACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTAC 176826 | ||||||| |||||| ||||| ||||| || || || || ||||| || || ||||| Sbjct 708 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAT 649 Query 176827 TTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTC 176886 ||||| || | |||||||| |||||| |||||| || || | | | || |||||| Sbjct 648 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTC 589 Query 176887 CTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCA 176946 || || || | || || || | ||||||||||| || | ||| | |||| ||||| Sbjct 588 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCT 529 Query 176947 TTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATT 177006 |||||| | || ||||| || ||||| || ||||| | || | ||| || ||| Sbjct 528 TTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATT 469 Query 177007 CCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGT 177066 ||| |||| ||||| ||||||| || ||||||||||||||||||||||| || ||| Sbjct 468 AATACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGT 409 Query 177067 AATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||| || ||||| || || || ||||||| Sbjct 408 AATGCTCATAATTTCCCTCTAGATCTAGCTGCTG 375 Score = 141 bits (156), Expect = 1e-28 Identities = 207/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCAT-ACCGTCAGAGAGATACCGTGGTC 19353 ||||||||| | || |||||||| || ||| | || |||| | ||| | | ||| |||| Sbjct 122342 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACCG-CGGAGCGTTTCCGCGGTC 122284 Query 19354 GTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTA 19413 | || || | ||| ||||| || ||||| || ||||| || ||||| | ||||| |||| Sbjct 122283 GAATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTA 122224 Query 19414 TCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAG 19471 | ||||||| || || |||||| || | ||| || | |||||| | Sbjct 122223 TAGATCTACCCGTTGTTGATTGGAAATTGGA--AACTGATATTCGCAAGAAACGGTTGCT 122166 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 ||||| || || || |||| ||||| || || ||||| ||||| |||||||| || Sbjct 122165 TAATTACAGTATTGATTTCGGAGTCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 122106 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 122105 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 122058 >seq5 Length=26133890 Score = 201 bits (222), Expect = 1e-46 Identities = 243/331 (73%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||||| |||||| ||||| ||||| || || || || ||||| || || ||||| ||| Sbjct 9071214 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 9071273 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTT 176889 || || | |||||||| |||||| |||| | || || | | | || || ||||| Sbjct 9071274 GGCCGATTGATCTTCCAATATGCTAGTTTCGACAATTCTCGTTCTTTACATTTATTCCTA 9071333 Query 176890 GCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTC 176949 || || | || || || | ||||||||||| || | ||| | |||| ||||| ||| Sbjct 9071334 GCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTC 9071393 Query 176950 AACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCT 177009 ||| | || ||||| || ||||| || ||||| | || | ||| || ||| | Sbjct 9071394 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 9071453 Query 177010 ACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAAT 177069 | |||| ||||| ||||||| || ||||||||||||||||||||||| || |||||| Sbjct 9071454 AATTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 9071513 Query 177070 GCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 ||||| || ||||| || || || ||||||| Sbjct 9071514 GCTCATAATTTCCCTCTAGATCTAGCTGCTG 9071544 >seq7 Length=17044513 Score = 176 bits (194), Expect = 5e-39 Identities = 204/274 (74%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 176384 ACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTT--- 176440 ||||||| || || || |||| |||| | || ||| | | ||||| ||||| Sbjct 8091114 ACAATGGTGGTCCTTATGAACTAATTGTTCTACAGTTCTTACTTGGTAT---AGCTTGCT 8091058 Query 176441 ACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTG 176500 ||||||| || | ||||||||||||| | | || || ||||| |||||||| ||||| Sbjct 8091057 ACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTG 8090998 Query 176501 CATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAG 176560 |||| || || | || | || || | || ||||| | | |||||| | ||||||| Sbjct 8090997 CATATTCAGCTCATGTTGCAGCTGCTACTGCTGTTTTTTTGATATATCCAATTGGTCAAG 8090938 Query 176561 GATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTAT 176620 || || |||||||||||||| || || || || |||| |||||||| ||| |||||| Sbjct 8090937 GAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGTAT 8090878 Query 176621 TCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 ||||||| ||||||||||| || ||||||||||| Sbjct 8090877 TCCAAGCTGAGCACAACATCCTTATGCACCCATT 8090844 Score = 123 bits (136), Expect = 3e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || || || | || || | || |||||| | | |||||| | ||||| Sbjct 8087222 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATATATCCAATTGGTCA 8087163 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618 |||| || |||||||||||||| || || || || |||| |||||||| ||| |||| Sbjct 8087162 AGGAAGCTTTTCTGATGGTATGCCCCTAGGAATCTCCGGTATTTTCAACTTCATGATTGT 8087103 Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 ||||||||| ||||||||||| || |||||| |||| Sbjct 8087102 ATTCCAAGCTGAGCACAACATCCTTATGCACTCATT 8087067 >seq2 Length=42086771 Score = 141 bits (156), Expect = 1e-28 Identities = 209/289 (72%), Gaps = 8/289 (3%) Strand=Plus/Plus Query 19295 ACCTGTAAC-AGTACAGTATCCTTACGAGAAACTCAT-ACCGTCAGAGAGATACCGTGGT 19352 ||||||||| ||| || |||||||| || ||| | || |||| | ||| | | ||| ||| Sbjct 37973350 ACCTGTAACTAGT-CAATATCCTTATGAAAAATTAATCACCG-CGGAGCGTTTCCGCGGT 37973407 Query 19353 CGTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCT 19412 || || || | ||| ||||| || ||||| || ||||| || ||||| | ||||| ||| Sbjct 37973408 CGAATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCT 37973467 Query 19413 ATCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTA 19470 || ||||||| || || |||||| || | ||| || | |||||| | Sbjct 37973468 ATAGATCTACCCGTTGTTGATTGGAAATTGGA--AACTGATATTCGCAAGAAACGGTTGC 37973525 Query 19471 GAAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCC 19530 ||||| || || || |||| ||||| || || ||||| ||||| |||||||| | Sbjct 37973526 TTAATTACAGTATTGATTTCGGAGTCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTC 37973585 Query 19531 CAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 37973586 CAACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 37973634 Score = 141 bits (156), Expect = 1e-28 Identities = 207/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCAT-ACCGTCAGAGAGATACCGTGGTC 19353 ||||||||| | || |||||||| || ||| | || |||| | ||| | | ||| |||| Sbjct 37987248 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACCG-CGGAGCGTTTCCGCGGTC 37987306 Query 19354 GTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTA 19413 | || || | ||| ||||| || ||||| || ||||| || ||||| | ||||| |||| Sbjct 37987307 GAATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTA 37987366 Query 19414 TCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAG 19471 | ||||||| || || |||||| || | ||| || | |||||| | Sbjct 37987367 TAGATCTACCCGTTGTTGATTGGAAATTGGA--AACTGATATTCGCAAGAAACGGTTGCT 37987424 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 ||||| || || || |||| ||||| || || ||||| ||||| |||||||| || Sbjct 37987425 TAATTACAGTATTGATTTCGGAGTCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 37987484 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 37987485 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 37987532 Score = 141 bits (156), Expect = 1e-28 Identities = 207/288 (72%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCAT-ACCGTCAGAGAGATACCGTGGTC 19353 ||||||||| | || |||||||| || ||| | || |||| | ||| | | ||| |||| Sbjct 38006055 ACCTGTAACTATTCAATATCCTTATGAAAAATTAATCACCG-CGGAGCGTTTCCGCGGTC 38006113 Query 19354 GTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTA 19413 | || || | ||| ||||| || ||||| || ||||| || ||||| | ||||| |||| Sbjct 38006114 GAATCCATTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTA 38006173 Query 19414 TCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAAAG--AAGAAAGAACTTAG 19471 | ||||||| || || |||||| || | ||| || | |||||| | Sbjct 38006174 TAGATCTACCCGTTGTTGATTGGAAATTGGA--AACTGATATTCGCAAGAAACGGTTGCT 38006231 Query 19472 AAATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCC 19531 ||||| || || || |||| ||||| || || ||||| ||||| |||||||| || Sbjct 38006232 TAATTACAGTATTGATTTCGGAGTCTGTATATTTTGTGGTAATTGCGTTGAGTATTGTCC 38006291 Query 19532 AACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 38006292 AACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 38006339 >seq3 Length=24358521 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 176548 CCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAAC 176607 ||| | ||| | | | |||| ||||| |||||| || | || || |||| || ||| Sbjct 12884640 CCAATTGGTTAGGAAGCTTT-TCTGACTGTATGCTCCTATGGATCTCCTGTACTTTAAAC 12884698 Query 176608 TTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 |||||| ||||||||||||| ||||||||||| | ||||||||||| Sbjct 12884699 TTTATGATTGTATTCCAAGCTGAGCACAACATCTTTATGCACCCATT 12884745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603432813396480