Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq8164 82.4 2e-11 seq3 82.4 2e-11 seq1 82.4 2e-11 >seq8164 Length=157712 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 38076 CGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 38017 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 38016 CCGTCTCCGCAAC 38004 >seq3 Length=24358521 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 15789374 CGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 15789433 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 15789434 CCGTCTCCGCAAC 15789446 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 15790320 CGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 15790379 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 15790380 CCGTCTCCGCAAC 15790392 >seq1 Length=26753024 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| |||||||||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 12885716 CGGGGTAGAGCAGCGTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 12885657 Query 21210 CTGTCTCCGCAAC 21222 | ||||||||||| Sbjct 12885656 CCGTCTCCGCAAC 12885644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162509043626952