Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq960 93.3 3e-14 seq15 93.3 3e-14 seq12 84.2 2e-11 >seq960 Length=1739 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||| | |||||||| ||||| | || || |||||| | Sbjct 1637 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCA 1578 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||||| ||||| || ||| | || || | Sbjct 1577 GATACTATTGACAAT--GTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACC 1520 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || |||| || | | | | | | |||| |||| Sbjct 1519 AGCAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACA 1460 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| || |||| ||||| | ||| ||||||| || Sbjct 1459 ACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 1411 >seq15 Length=715379 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||| | |||||||| ||||| | || || |||||| | Sbjct 589722 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACAATTACTTTGGAAGTGGAAAGCTCA 589663 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||||| ||||| || ||| | || || | Sbjct 589662 GATACTATTGACAAT--GTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACC 589605 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || |||| || | | | | | | |||| |||| Sbjct 589604 AGCAGAGGTTGATTTTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACA 589545 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| || |||| ||||| | ||| ||||||| || Sbjct 589544 ACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 589496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || |||||| ||||| | || || |||||| | Sbjct 547764 ATGCAGATCTTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 547823 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| ||||| ||||| ||||| || ||| |||| || | Sbjct 547824 GATACTATTGATAAT--GTCAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 547881 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| || | || || | | | | | | | || |||| Sbjct 547882 AGCAGAGGTTGATCTTTGCAGGAAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTACA 547941 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| |||| | || ||||| | || ||||||| || Sbjct 547942 ACATTCAAAAGGAGTCCACTCTTCACTTGGTGCTTCGACTGCGTGGTGG 547990 >seq12 Length=1121147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||||| || ||||| || || | || ||||| ||| | Sbjct 24679 ATGCAAATCTTCGTTAAAACTCTAACCGGGAAGACCATAACCCTAGAAGTCGAGAGCTCT 24620 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || || || || ||||| || || | || || | Sbjct 24619 GATACCATCGACAAC--GTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACC 24562 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| ||||| |||||||| |||||||| || | || | | | |||| |||| Sbjct 24561 AGCAGAGGTTGATTTTCGCCGGAAAGCAATTGGAGGATGGCCGAACCCTCGCCGACTACA 24502 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||||||| |||||| | || ||| | || || Sbjct 24501 ACATCCAAAAGGAATCGACTTTGCACTTGGTTCTCCGATTGAGAGGTGG 24453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355826992136028