Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq15 95.1 1e-14 seq3 82.4 7e-11 >seq15 Length=715379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || ||| ||| || || ||||| ||||| || || || || | || || Sbjct 589969 CACCAGATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTGCGGCCATCCTC 590028 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| || || ||||| || || | ||||||||| |||||| | || ||||||||| Sbjct 590029 AAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG-ATGCCCTCTTTGTCTT 590087 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| | | | || ||| ||| || |||| ||||| | | Sbjct 590088 GGATCTTAGCCTTGACATTATCAATTGTGTCGGAGCTCTCAACCTCCAATGTGATGGTCT 590147 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || || |||||||||||||| Sbjct 590148 TTCCGGTGAGAGTCTTGACAAAGATTTGCAT 590178 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || |||||||||||||| || || | || |||||||| || || ||||| Sbjct 589760 TCCTTTTGGATGTTATAATCGGCAAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAG 589819 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGT 39212 || || | |||||| |||| ||| | || || || ||| ||| ||| || ||||| | Sbjct 589820 ATGAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTATCC-TGAATTTTTGCTTTGACATT 589878 Query 39213 CGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | | ||||| ||| ||| || |||| || || | || || || || || || Sbjct 589879 ATCTATGGTATCCGAGCT---CTCAACCTCCAAGGTTATCGTCTTCCCAGTAAGTGTCTT 589935 Query 39270 AACAAAGATTTGCAT 39284 |||||||||||||| Sbjct 589936 GACAAAGATTTGCAT 589950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || || |||||||| || ||||| || ||||| || ||| | || || Sbjct 547745 CACCAAGTGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 547686 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || || || || || | ||||||||| | ||| | || ||| |||||| Sbjct 547685 AAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 547626 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| || || |||| ||||| | Sbjct 547625 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 547569 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||||||||| Sbjct 547568 CTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 547536 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| || || || ||| ||| || || || || || |||||||| || || | || || Sbjct 527491 CACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 527432 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || || | ||||||||| | ||| | || ||| |||||| Sbjct 527431 AAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 527372 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| || || |||| ||||| | Sbjct 527371 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 527315 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || || || || || || ||||||||||||| Sbjct 527314 CTTCCCGGTAAGGGTCTTGACAAAGATTTGCA 527283 >seq3 Length=24358521 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| |||||| ||| || || || || || || ||||| || || | || || Sbjct 747780 CACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTC 747721 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || ||||| || | | |||||||| |||||| | | ||| |||||| Sbjct 747720 GAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG-ATACCCTCCTTGTCCT 747662 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATAC 39250 ||| ||| |||| | | | || || ||| ||| || |||| ||||| Sbjct 747661 GGATCTTCGCCTTGACATTGTCAATGGTGTC---CGAGCTCTCGACCTCCAGAGTGATGG 747605 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || ||||| || ||||| Sbjct 747604 TCTTTCCCGTCAGGGTCTTGACAAAAATCTGCAT 747571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| |||||| ||| || || || || || || ||||| || || | || || Sbjct 749764 CACCAAATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTC 749705 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || ||||| || | | |||||||| |||||| | | ||| |||||| Sbjct 749704 GAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG-ATACCCTCCTTGTCCT 749646 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATAC 39250 ||| ||| |||| | | | || || ||| ||| || |||| ||||| Sbjct 749645 GGATCTTCGCCTTGACATTGTCAATGGTGTC---CGAGCTCTCGACCTCCAGAGTGATGG 749589 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || ||||| || ||||| Sbjct 749588 TCTTTCCCGTCAGGGTCTTGACAAAAATCTGCAT 749555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429502860749732