Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq15 116 3e-21 seq10 100 2e-16 seq12 95.1 8e-15 seq3 93.3 3e-14 seq2 89.7 3e-13 >seq15 Length=715379 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 547080 ATGCAGATTTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 547139 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| ||||| | || ||||| || Sbjct 547140 GACACCATTGACAATGTCAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 547198 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||||||||| Sbjct 547199 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAA 547258 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 547259 CATCCAGAAGGAGTCCAC 547276 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 527054 ATGCAGATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 527113 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || || ||||| ||||| | || ||||| || Sbjct 527114 GACACCATTGACAATGTCAAAGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 527172 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||||||||| Sbjct 527173 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAA 527232 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 527233 CATCCAGAAGGAGTCCAC 527250 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| ||||| || ||||| ||||| ||||| | | Sbjct 590406 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTCT 590347 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || || ||||| || ||| | || || || || Sbjct 590346 GACACGATCGACAATGTCAAAGC-CAAGATCCAAGACAAGGAGGGTATTCCCCCGGACCA 590288 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || || | ||||| | | ||| ||||| Sbjct 590287 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAA 590228 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 590227 CATCCAGAAGGAGTCCAC 590210 >seq10 Length=1734888 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||||||||||| || || | Sbjct 422832 AAGATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGC 422891 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| || || | || ||||| Sbjct 422892 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGCATTCCACCAGA 422950 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || ||||| ||||| || || ||||| | ||||| || | || || Sbjct 422951 CCAGCAGCGTTTGATTTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCTTGGCTGACTA 423010 Query 23787 CAACATACAAAAAG 23800 ||||| || |||| Sbjct 423011 TAACATCCAGAAAG 423024 >seq12 Length=1121147 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || ||||| || ||||| || ||||| | | Sbjct 24451 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTTGAGAGCTCC 24392 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || ||| | || |||||||| Sbjct 24391 GATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCAG 24332 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||| |||| |||| | || | | ||||||||| Sbjct 24331 CAGAGGCTTATCTTCGCCGGTAAGCAATTGGAGGACGGTAGGACCCTTGCGGATTACAAC 24272 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || ||||| ||||| || || || || ||| Sbjct 24271 ATCCAAAAGGAGTCAACTTTGCACTTGGTT 24242 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || || ||| | || || || | | Sbjct 24223 ATGCAGATTTTCGTGAAGACCCTCACAGGGAAGACAATAACTTTGGAGGTCGAGAGCTCT 24164 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| ||||| | || |||||||| Sbjct 24163 GATACGATTGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAAGGCATTCCTCCAGATCA 24105 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||| |||| || | | | ||| | | |||||||| Sbjct 24104 GCAGAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTGGCGGATTACAA 24045 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 24044 CATCCAGAAAGAGTCGAC 24027 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || || ||||| || ||||| | | Sbjct 23995 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 23936 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| | || | || ||||| || || | || || || || Sbjct 23935 GACACTATTGACAATGTCAAAGCTAAGA-TTCAAGACAAGGAGGGGATCCCACCGGACCA 23877 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| || || || | || || | | ||||| || Sbjct 23876 GCAGAGGTTGATCTTTGCTGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTATAA 23817 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 23816 TATCCAGAAAGAGTCCAC 23799 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | ||||| |||||||| || || || || ||||||||||| || || | | Sbjct 25135 ATGCAGGTCTTCGTCAAAACCCTAACCGGCAAGACAATCACTCTCGAGGTGGAGAGCTCT 25076 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || ||||| Sbjct 25075 GACACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCCGATCAG 25016 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| ||| |||| |||| |||| ||||||| |||||| Sbjct 25015 CAGAGGCTCATCTTCGCCGGCAAGCAATTGGAGGACGGCAGCACCCTAGGCGACTACAAC 24956 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || || ||| Sbjct 24955 ATCCAGAAGGAATCAACTCTTCACTTGGTT 24926 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | ||||| |||||||| || || || || ||||||||||| || || | | Sbjct 45168 ATGCAGGTCTTCGTCAAAACCCTAACCGGCAAGACAATCACTCTCGAGGTGGAGAGCTCT 45109 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || ||||| Sbjct 45108 GACACAATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCCGATCAG 45049 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| ||| |||| |||| | || ||||||| |||||| Sbjct 45048 CAGAGGCTCATCTTCGCCGGCAAGCAATTGGAGGACGGCAGAACCCTAGGCGACTACAAC 44989 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | || || ||| Sbjct 44988 ATCCAGAAGGAATCAACTCTTCACTTGGTT 44959 >seq3 Length=24358521 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| |||||||| || |||||||| || || || | || Sbjct 747571 ATGCAGATTTTTGTCAAGACCCTGACGGGAAAGACCATCACTCTGGAGGTCGAGAGCTCG 747630 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || ||| | || ||||| || Sbjct 747631 GACACCATTGACAATGTCAAGGC-GAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 747689 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || || || || | || || | | || ||||| Sbjct 747690 GCAAAGGTTGATCTTTGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTTGCTGACTACAA 747749 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| | ||||| || Sbjct 747750 CATCCAGAAGGAGTCCACGCTCCATTTGGT 747779 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| |||||||| || |||||||| || || || | || Sbjct 749555 ATGCAGATTTTTGTCAAGACCCTGACGGGAAAGACCATCACTCTGGAGGTCGAGAGCTCG 749614 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| || ||| | || ||||| || Sbjct 749615 GACACCATTGACAATGTCAAGGC-GAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 749673 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || || || || | || || | | || ||||| Sbjct 749674 GCAAAGGTTGATCTTTGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTTGCTGACTACAA 749733 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || |||||||| | ||||| || Sbjct 749734 CATCCAGAAGGAGTCCACGCTCCATTTGGT 749763 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || | | Sbjct 746887 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAAAGCTCC 746946 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| || || |||||| | || ||||| || Sbjct 746947 GACACCATTGACAACGTCAAGGCCAAAATTCAAGATAAGGAAGGTATCCCCCCAGACCAG 747006 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || ||||| || | || || | | ||||||||| Sbjct 747007 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCAGATTACAAC 747066 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 747067 ATCCAGAAGGAGTCAAC 747083 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || | | Sbjct 747115 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAAAGCTCC 747174 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || |||||| || || |||||| | || ||||| || Sbjct 747175 GACACCATTGACAACGTCAAGGCCAAAATTCAAGATAAGGAAGGTATCCCCCCAGACCAG 747234 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || |||||||| || ||||| || | || || | | ||||||||| Sbjct 747235 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCAGATTACAAC 747294 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 747295 ATCCAGAAGGAGTCAAC 747311 >seq2 Length=42086771 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || || || || || || || || ||| Sbjct 18566465 AACATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCC 18566524 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| || || | || ||||| Sbjct 18566525 TCTGACACCATTGACAATGTGAAGGCCAAGA-TCCAAGACAAGGAGGGCATTCCCCCAGA 18566583 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| | || || ||||| || || || || |||| || || ||| ||||| Sbjct 18566584 CCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCAGATTA 18566643 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 18566644 CAACATCCAGAAGGAATCGAC 18566664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337975968467312