Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 >seq4 Length=23934096 Score = 138 bits (152), Expect = 1e-27 Identities = 376/575 (65%), Gaps = 3/575 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || ||||| || || || |||||||| || ||||| |||| ||||| || ||||| Sbjct 23380668 AAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCTCGAGATCAACTCGTTTGAGAACGTC 23380727 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| |||||||| || | ||| || ||||||||||| ||| ||| ||| || ||| Sbjct 23380728 AGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTCCCCGAGAAG 23380787 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 ||||| ||||| ||| ||||| || || | || | | ||||| || | | Sbjct 23380788 AATATCCCTTCCACGCAAGCAAAGGCCACGATCCGCTCCGCAAACGA---TTCTGAGCCG 23380844 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| || ||||| | || || || | ||||| ||||| || | || ||| Sbjct 23380845 TCGATCCAGCGTAGGGCCCACTGGGCCTTCTTGGTGACGCAGGGAATGGTATCGATCGCG 23380904 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 | ||| | | | || || | ||| | || || || || | || ||||| ||| Sbjct 23380905 TGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGCTGTAC 23380964 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 || || || || || || || || || ||||| || ||||| ||| | ||| || | Sbjct 23380965 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGAG 23381024 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 || || ||||| || || ||| | | | || || || || |||||| ||| Sbjct 23381025 ACCTGGACTTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCAGAGGCA 23381084 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 || || || || | || || | || |||| || ||| |||| | || ||| ||| Sbjct 23381085 GCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTTCCCAA 23381144 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 ||| | | || | | |||||| || || | ||||| || || || || || || Sbjct 23381145 TGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTC 23381204 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||||| ||| || || || || || ||||| Sbjct 23381205 TTGTACATCTCCCAGATTTCCGGGTATTGGATCGG 23381239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427007109098612