Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-21 seq1 102 1e-16 >seq6 Length=21292200 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 |||||||| || || | | ||||||| |||||||||| |||| | || ||||| Sbjct 18347201 TCATATTGGGTGTACAACTTCTCAAATTTTTCTCCCCAAAGATCAGCTAAGCCAGGAGCC 18347260 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | ||| ||||| | ||||| | | |||| || ||| ||||||||| Sbjct 18347261 TCATTTGGACAAAACAAAGACCATTGCCCATCATTTTGGACTCTTTCCATGAAGAGATCA 18347320 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || ||||| |||||| |||||||||||| | | ||||||||| Sbjct 18347321 GGAATCCAGAGAGCATAAAATAGATCTCGAGCCCGATGTTCTTC 18347364 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||||||| |||| || | ||||||| ||||| | ||||| | || | | || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 ||| |||| | ||| || || ||||| | ||| || || || || | || | ||||| Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 18348249 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 |||| ||||| || ||||| || |||| | ||||| || || | ||| || | || | Sbjct 18348250 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 18348309 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||| |||| || ||||||||| || ||||| || Sbjct 18348310 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || ||| ||||| | |||| | ||| || | |||||| Sbjct 18347784 CCCCCTTGATCAACATAACGAGCAGTGCTATTAAACACTCGAAGCATAGGCACAATACCA 18347843 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || || ||||| ||| |||||| || || |||| ||||||||| |||||| Sbjct 18347844 TTTGAAGTACCGTTTGTCCCACGAATATAGCTACCTGTTGCACGAATATTATGAATGGAG 18347903 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 || || | ||||| || || || | || || ||||||||||| | || Sbjct 18347904 ATACCAAGCCCTCCAGCTGATTTGCTAATAATGGCACATTCCTTCAATGTATCAAAAATT 18347963 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || | |||||||| || ||||| | ||| || |||||| Sbjct 18347964 CCTTGAATACTGTCGTCTTTCATGCACATAAGGAAGCAGCTA 18348005 >seq1 Length=26753024 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||| | || || ||| |||||||| || ||||| ||| |||| || Sbjct 12870421 CTCTCTTTCATATCGGGTGTAAAGCTCTTCAAATTTTTCACCCCAGCAATCTGCCAAACC 12870480 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || | ||||| || || | ||||||||| | ||||| | ||||| || ||| || Sbjct 12870481 TGGAGACTCATTAGGACAAAACAATGACCAATTTCCATCACTTTGAACTCTTTCCATGAA 12870540 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| || ||| ||| ||||| || | || ||| ||||| Sbjct 12870541 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGAGCTCGATGCTCTTC 12870591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | |||| |||||| ||||||||||| ||| || Sbjct 12870863 CCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGGAACAATGCCA 12870922 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || || |||||||||||| |||||| || || | || ||||| || || || Sbjct 12870923 TTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGAG 12870982 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| ||| || || | ||| || ||||| ||||| || || Sbjct 12870983 ACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATAAATG 12871042 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||| || || || |||||| Sbjct 12871043 CCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694597909048960