Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20mume_20[refseq_20GCF_5F000346735.1_202014-02-28] 8,164 sequences; 234,030,239 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq6 116 5e-21 >seq1 Length=26753024 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | || || | |||| |||||| ||||||||||| |||||| Sbjct 12870863 CCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGGAACAATGCCA 12870922 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| |||||| || || |||||||| || || ||| Sbjct 12870923 TTGGAAGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGAG 12870982 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| ||| ||| ||| | |||||| ||||| || ||||| ||| Sbjct 12870983 ACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGTATCATAAATG 12871042 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||| || || || |||||| Sbjct 12871043 CCTTCAATGCTATCATCTTTCATGCAAATGAGGAAGCAGCTA 12871084 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||| | || || | | |||||||| || ||||| ||| ||||||| Sbjct 12870421 CTCTCTTTCATATCGGGTGTAAAGCTCTTCAAATTTTTCACCCCAGCAATCTGCCAAACC 12870480 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| | ||||| ||||| | ||||||||| | ||||| | ||| | || ||| || Sbjct 12870481 TGGAGACTCATTAGGACAAAACAATGACCAATTTCCATCACTTTGAACTCTTTCCATGAA 12870540 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| || ||| ||| ||||| || | || | | ||||| Sbjct 12870541 GAGATCAGGCACCCAAAGTGCATAAAAAAGATCACGAGCTCGATGCTCTTC 12870591 >seq6 Length=21292200 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 |||||||| || || ||| ||||||| |||||||||| |||| | || |||||| Sbjct 18347201 TCATATTGGGTGTACAACTTCTCAAATTTTTCTCCCCAAAGATCAGCTAAGCCAGGAGCC 18347260 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | ||| ||||| | ||||| | | || | || ||| ||||||||| Sbjct 18347261 TCATTTGGACAAAACAAAGACCATTGCCCATCATTTTGGACTCTTTCCATGAAGAGATCA 18347320 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 || ||||| |||||| |||||||||||| | | | ||||||| Sbjct 18347321 GGAATCCAGAGAGCATAAAATAGATCTCGAGCCCGATGTTCTTC 18347364 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||| || | || |||| |||||| ||||||| | || | | || Sbjct 18348131 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 18348190 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| | | | | || || || | ||| || || || |||| || | ||||| Sbjct 18348191 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 18348249 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| ||||| || | ||| ||| |||| | ||||| || || | ||| || | || | Sbjct 18348250 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 18348309 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||| |||| || |||||||||||| ||||| || Sbjct 18348310 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 18348358 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | |||||| ||||| | |||| | ||| || | ||| || Sbjct 18347784 CCCCCTTGATCAACATAACGAGCAGTGCTATTAAACACTCGAAGCATAGGCACAATACCA 18347843 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || ||||| ||||| ||| |||||| || || ||||||||||||| ||| || Sbjct 18347844 TTTGAAGTACCGTTTGTCCCACGAATATAGCTACCTGTTGCACGAATATTATGAATGGAG 18347903 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || | ||||| || ||| || | ||||| |||||||| ||| | || Sbjct 18347904 ATACCAAGCCCTCCAGCTGATTTGCTAATAATGGCACATTCCTTCAATGTATCAAAAATT 18347963 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || | ||||| || || ||||| | ||| || |||||| Sbjct 18347964 CCTTGAATACTGTCGTCTTTCATGCACATAAGGAAGCAGCTA 18348005 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/122 (77%), Gaps = 8/122 (7%) Strand=Plus/Plus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCT-TAT 76142 |||||| || | |||||| || |||||||||||||||||||||||||| || || | || Sbjct 18346318 AAGAATGAAAGTATCTGCAAGACCCTGAACTCCAATACCAATAGGTCTGTG-CTGTAAAT 18346376 Query 76143 TGGA---AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGAT 76199 | || || ||| ||| ||| ||||| ||||| | ||| || ||||| ||||||| Sbjct 18346377 TTGACCTCTTTGCAGTTTC---AATGGGGTAGTAATTGACATCAATTATTTTGTTGAGAT 18346433 Query 76200 TT 76201 || Sbjct 18346434 TT 18346435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712861645044480