Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 145 1e-29 seq6 140 5e-28 seq4 140 5e-28 >seq2 Length=30405870 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || || ||||| ||| | ||| | || | Sbjct 22653915 ATGCAAATATTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 22653856 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||| |||||||||||| |||| || || ||||| || Sbjct 22653855 GATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAACAAGGAATCCCTCCTGACCAG 22653796 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| ||||| || |||||||| || | || | | ||||||||| Sbjct 22653795 CAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAAT 22653736 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||| | || |||||| | ||| | ||||| ||||||||||| Sbjct 22653735 ATCCAGAAGGAACCCACCTTGCATCTTGTTCTCCGTTTGCGAGGTGGTAT 22653686 Score = 141 bits (156), Expect = 1e-28 Identities = 196/271 (72%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||| | | || || || ||||| ||| | ||| | || | Sbjct 22654143 ATGCAAATATTTGTCAAGGCTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 22654084 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || |||||||| || ||||| || |||||||| ||| Sbjct 22654083 GATACCATAGACAATGTGAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 22654024 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||||||||| || | |||||| | | || || | |||||||||| Sbjct 22654023 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAT 22653964 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || || || ||||| |||||||| | ||| | || ||| | ||||| || ||| ||| Sbjct 22653963 ATCCAGAAGGAATCTGCTTTGCATCTTGTTCTTCGATTAAGGGGTGGGATGCAAATATTT 22653904 Query 124778 ATAAAAA--TTGATTGTAAATAAATATCACT 124806 | || | |||| || ||| | ||||||| Sbjct 22653903 GTTAAGACTTTGACTGGAAA-GACTATCACT 22653874 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || ||||| || || ||| | || | || ||| Sbjct 22653687 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACCATCACTCTTGATGTGGAGAGCTC- 22653629 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | || || ||||||||||| ||||| || |||||||| || Sbjct 22653628 TGATACCATAGGCAATGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCTGACCA 22653569 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||||||||| || | |||||| | | || || | ||||||||| Sbjct 22653568 ACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 22653509 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || ||||| ||||||||| | || | || | || ||||| || Sbjct 22653508 TATCCAGAAGGAATCTACTTTGCATCTTGTCCTTCGCCTTCGTGGTGGAAT 22653458 Score = 120 bits (132), Expect = 5e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| ||||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 15130006 AAGATTCAAGACAAAGAGGGAATTCCACCAGACCAGCAGAGGCTTATATTTGCTGGAAAG 15129947 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| |||||||| || | || | | |||||||| || || || ||||| || |||||| Sbjct 15129946 CAACTAGAGGATGGTAGGACCCTTGCTGATTATAACATCCAGAAGGAATCCACCTTGCAT 15129887 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||| | ||||| ||||||||||| Sbjct 15129886 CTTGTTCTCCGTTTGCGAGGTGGTAT 15129861 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 124626 ATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGC-TTATTTTTGCAGGAAAACA 124684 ||| | || || ||||| ||||||||||| || || || | |||| ||| | || || | Sbjct 22654774 ATTAAGGACAAGGAAGGGATACCACCTGAGCAGCAGAGTCTTTATCTTTTCTGGGAAGAA 22654715 Query 124685 ATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTT 124744 | | |||||| || | || | | ||| ||| | || || |||||||| ||| ||||||| Sbjct 22654714 ACTTGAGGATGGTAGGACGCTGGCAGACTATGACATCCAGAAAGAATCCACTCTGCATTT 22654655 Query 124745 GGTTTTACGTTTACGAGGTGGTAT 124768 | || | |||||| | ||||| || Sbjct 22654654 GATTCTGCGTTTAAGGGGTGGCAT 22654631 >seq6 Length=30767194 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || || || ||||| ||| | || | | | Sbjct 19728616 ATGCAAATATTTGTTAAGACGCTGACCGGAAAGACTATCACTCTTAAGGTGAAGGGTTCG 19728675 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || ||| ||||||||||||||||| || || ||||| || Sbjct 19728676 GATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAG 19728735 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| ||||| || |||||||| || | || | | ||||||| Sbjct 19728736 CAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAGC 19728795 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || |||||| | ||| | ||||| ||||||||||| Sbjct 19728796 ATCCAGAAGGAATCCACCTTGCATCTTGTTCTCCGTTTGCGAGGTGGTAT 19728845 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || ||||| || ||| | ||| | || ||| Sbjct 23848422 ATGCAGATTTTCGTCAAAACCCTAACCGGGAAAACAATTACTCTGGAGGTCGAGAGCTCC 23848481 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || || ||||| || || ||||| || || ||||| Sbjct 23848482 -GATACCATTGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 23848540 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || || || || ||||| ||||| || |||| | | ||||| || Sbjct 23848541 GCAGAGGCTTATCTTCGCCGGTAAGCAATTGGAGGACGGTAGAACCCTTGCGGATTACAA 23848600 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||||||||| |||||| | ||| | |||||||||| Sbjct 23848601 CATCCAAAAGGAGTCAACTTTGCACTTGGTTCTGCGTCTGAGAGGTGGTAT 23848651 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| |||| ||| Sbjct 23848878 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTC- 23848936 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | ||| || |||||||| || || || || ||||| || || Sbjct 23848937 TGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAGGGGATCCCACCGGACCA 23848996 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || ||||| | |||||| |||| || | | ||||||||| Sbjct 23848997 GCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTATAA 23849056 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || ||| | ||| | || | ||| | || |||||| Sbjct 23849057 TATCCAGAAAGAGTCTACTCTCCATCTTGTCCTTCGTCTGCGTGGTGGT 23849105 >seq4 Length=25843236 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||||||||| || || || ||||| | ||| ||||| Sbjct 12761288 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATAACCTTGGAGGTTGAAAGCTCG 12761229 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || |||| |||| |||||||| ||||| ||||| || || |||||||| Sbjct 12761228 GATACCATAGATAATGTAAAGGCAAAAATTCAGGATAAGGAAGGCATTCCCCCTGATCAG 12761169 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || || ||| | |||||| | || || | | |||||||| Sbjct 12761168 CAGAGGCTAATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACCCTTGCCGATTATAAC 12761109 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||||||| |||| |||| | || || || |||||||| Sbjct 12761108 ATCCAAAAGGAATCAACTCTGCACCTGGTGCTTCGGTTGCGTGGTGGTAT 12761059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | || ||||| Sbjct 12721434 ATGCAAATCTTTGTTAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 12721493 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || || || || || || || || || || || Sbjct 12721494 GATACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 12721553 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || || | | || ||||| Sbjct 12721554 CAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTATAAC 12721613 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| ||| |||||||||| | || | || |||||||| Sbjct 12721614 ATCCAAAAAGAATCGACTCTGCATTTGGTGCTCCGGCTGCGTGGTGGTAT 12721663 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || || || || || ||| | ||| | || ||| Sbjct 1214581 ATGCAGATTTTTGTGAAGACCCTGACGGGAAAGACCATCACTCTGGAGGTCGAGAGCTCG 1214522 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || ||| || || || || || ||||| ||||| || || Sbjct 1214521 -GACACCATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATCCCACCAGACCA 1214463 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||||||||| || | |||||| | || || | | || || || Sbjct 1214462 GCAAAGGTTGATCTTTGCAGGAAAGCAGCTGGAGGATGGCCGTACCCTTGCTGACTACAA 1214403 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || ||| | |||||||| | ||| | || |||||||| Sbjct 1214402 CATCCAGAAGGAGTCCACTCTCCATTTGGTGCTTCGTCTCCGTGGTGGTAT 1214352 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| || |||||||| || || || || || ||||| || || || || || Sbjct 1214953 AAAATTCAAGACAAGGAAGGTATCCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAG 1214894 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | || || | | ||| ||||| || || || || ||||| | || Sbjct 1214893 CAGCTGGAGGATGGCCGTACCCTCGCAGACTATAACATCCAGAAGGAGTCAACGCTCCAC 1214834 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| | || |||||||| Sbjct 1214833 TTGGTGCTCCGTCTGCGTGGTGGTAT 1214808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454186905600