Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq1 91.5 2e-13 >seq4 Length=25843236 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | || |||||| || || ||||| || || || || || | Sbjct 1215050 ACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCC 1215109 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| ||||||||||| || ||||| ||||| ||||||||||| | || | || |||||| Sbjct 1215110 GTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTT 1215169 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || |||| ||| | | | ||||| || ||||| || | |||| Sbjct 1215170 GTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGA 1215228 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || || || || ||||||||||| Sbjct 1215229 TGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1215265 Score = 111 bits (122), Expect = 2e-19 Identities = 143/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| |||||||||||||| || || || | || || |||||||| ||||| || Sbjct 12761325 CTCCTTTTGGATATTGTAATCAGCTAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAA 12761384 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | || ||| ||||| ||| || |||| | Sbjct 12761385 GATGAGCCTCTGCTGGTCTGGTGGAATGCCCTCTTTGTCTTGGATCTTAGCCTTGACGTT 12761444 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | |||||| |||| || || || | |||||||| || || || || ||||| Sbjct 12761445 ATCAATCGTGTCGGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTT 12761501 Query 43169 TACAAAGATTTGCATT 43184 ||||||||||||||| Sbjct 12761502 GACAAAGATTTGCATT 12761517 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | | || || ||||||||||| || || Sbjct 12722309 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGCTTACCGGCAAA 12722250 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 12722249 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 12722191 Query 43111 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | ||| ||||| ||||| || || |||| Sbjct 12722190 TATCAATTGTATC---CGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCT 12722134 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 12722133 TCACAAAGATCTGCAT 12722118 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || ||||| ||||| || || || | || || Sbjct 12707430 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTC 12707371 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| | ||||||||| | || | || |||||||||| Sbjct 12707370 GAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 12707311 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 12707310 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12707254 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||||||||| Sbjct 12707253 CTTCCCGGTAAGGGTCTTGACAAAGATTTGCAT 12707221 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || ||||| || || || || || | || || Sbjct 12707658 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 12707599 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| | ||||||||| | || | || |||||||||| Sbjct 12707598 AAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 12707539 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 12707538 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12707482 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||||||||| Sbjct 12707481 CTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 12707449 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||||| || || ||||| || || || ||||| || || || | || || Sbjct 12721643 CACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 12721584 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||||||||| || || ||||| | ||||||||| | || | || |||||||||| Sbjct 12721583 AAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 12721524 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 12721523 GATCTTTGCCTTGACATTGTCAATGGTATCCGAGCT---TTCAACTTCCAAGGTGATTGT 12721467 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||||||||| Sbjct 12721466 CTTCCCAGTAAGGGTCTTAACAAAGATTTGCAT 12721434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 12760641 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 12760700 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| | ||||||||| | || | || |||||||| | ||| | || | ||| | Sbjct 12760701 GATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGT-CTTGAATCTTGGCTTTCACAT 12760759 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 12760760 TATCAATGGTATCAGAACTC---TCCACCTCCAAAGTTATCGTCTTCCCAGTCAGAGTCT 12760816 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||| ||||| Sbjct 12760817 TCACAAAGATCTGCAT 12760832 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || ||||| || || || || || | || || Sbjct 12721415 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTC 12721356 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| || ||||| | ||||||||| | || | | |||||||||| Sbjct 12721355 AAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTG 12721296 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 43150 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 12721295 GATCTTTGCCTTGACATTGTCAATAGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12721239 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| |||||||||||||| Sbjct 12721238 CTTCCCGGTAAGGGTCTTGACAAAGATTTGCAT 12721206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| |||||||||||| ||||| ||||| || |||| | || || Sbjct 12722099 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC 12722040 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || | | ||||||||| | || | | |||||||||| Sbjct 12722039 GAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 12721980 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 |||||| || | | | | || || ||| |||||| || | || ||||| Sbjct 12721979 GATTTTGGCCTTAACATTATCAATAGTATCAGAGCT---TTCCACTTCCAGAGTAATGGT 12721923 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || || ||||| || ||||| Sbjct 12721922 TTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| |||| || |||||||||||||||||| || || || |||| | Sbjct 12760845 ACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATATTGTAGTCGGCAAGGGTCCTTCC 12760904 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || ||||| | | ||||||||| | || | | |||||| Sbjct 12760905 ATCCTCCAGCTGCTTGCCTGCAAATATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTT 12760964 Query 43088 GTCCATGATTTT 43099 |||| |||||| Sbjct 12760965 GTCCTGGATTTT 12760976 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||||||||| ||||||| ||| || |||| || |||||||| || || || Sbjct 1214162 CTCCTTCTGAATATTGTAGTCAGCCAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAA 1214221 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 1214222 GATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1214281 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | ||||| || || || || || ||||| Sbjct 1214282 GTCAATGGTGTCCGAGCTC---TCGACCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTT 1214338 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 1214339 CACGAAGATCTGCAT 1214353 >seq1 Length=47851208 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 26252856 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 26252915 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | || ||||||||| ||| || || | | Sbjct 26252916 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 26252975 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | || || || || || || | || ||||| || |||||||| || || || Sbjct 26252976 TCGATGGTATCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 26253035 Query 43173 AAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 26253036 AAGATCTGCATGTTTGCG 26253053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816227637760