Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 109 8e-19 seq4 95.1 2e-14 seq2 89.7 8e-13 seq6 84.2 3e-11 >seq7 Length=22388614 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || |||| || | || || || || || ||||||||| Sbjct 12116138 GTTCCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCT 12116197 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || ||||| || ||||||||||||||||| |||||||| ||| Sbjct 12116198 GCAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGA 12116257 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 12116258 GGGATGCCTTCCTTATCCTG 12116277 >seq4 Length=25843236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || ||||| || | | || || || || ||||||||| Sbjct 7555406 GTTCCTCCCCTCAGCCTCAAAACCAAGTGAAGCATCGACTCCTTTTGGATGTTATAATCT 7555465 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || ||||| || |||||||||||||||| ||| || || ||| Sbjct 7555466 GCAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCGTTGTTGGTCAGGA 7555525 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 7555526 GGGATGCCTTCCTTATCCTG 7555545 >seq2 Length=30405870 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | || | ||| ||||||||||| || ||||||||||||| Sbjct 22653459 TTCCACCACGAAGGCGAAGGACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCTG 22653518 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | || ||||| |||||||| | ||||| || || || | Sbjct 22653519 CCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGTG 22653578 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || ||||| |||||||| Sbjct 22653579 GGATCCCTTCCTTATCTTG 22653597 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| | ||| || || | ||| |||| || |||||||||||||| | || Sbjct 22653734 ATATTATAATCAGCAAGGGTCCTACCATCCTCTAGCTGCTTTCCAGCAAAAATAAGCCTC 22653793 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| ||||||| ||||||||| Sbjct 22653794 TGCTGGTCAGGAGGGATTCCTTGTTTATCTTG 22653825 >seq6 Length=30767194 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||| || || ||||| || || ||||||| | ||| || || | ||| |||| || Sbjct 19728819 ATGCAAGGTGGATTCCTTCTGGATGCTATAATCAGCAAGGGTCCTACCATCCTCTAGCTG 19728760 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||||||||| | || ||||| || ||||| ||||||||||||||||| Sbjct 19728759 CTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATTCCTTCTTTATCTTG 19728706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743524615536640