Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq4 93.3 4e-14 seq3 89.7 5e-13 seq2 89.7 5e-13 >seq6 Length=30767194 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || || || | || || || || Sbjct 23848650 ATGCAGATATTCGTGAAGACCCTTACAGGGAAGACAATAACTTTGGAGGTCGAGAGCTCT 23848709 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || || ||||||||||||| | || || || ||| Sbjct 23848710 GATACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATTCCTCCAGATCAG 23848769 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || || ||||| || | |||| || ||||| ||| Sbjct 23848770 CAGAGGCTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTGGCGGATTACAAC 23848829 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| ||||||||||||||||| || || || Sbjct 23848830 ATCCAGAAAGAGTCGACTCTTCATCTGGTGCTCAGGCT 23848867 >seq4 Length=25843236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || || ||||| || |||||| |||| |||||| || Sbjct 12706993 ATGCAGATTTTCGTGAAAACCCTCACGGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 12707052 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||||| | || || |||||| Sbjct 12707053 GACACCATTGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 12707112 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| | || || || | |||||| ||| Sbjct 12707113 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAAC 12707172 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || |||| ||| | || | || |||| Sbjct 12707173 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGTA 12707221 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || |||||||| || |||||| |||| |||||| || Sbjct 12720978 ATGCAGATCTTCGTGAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTTGAAAGCTCT 12721037 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||||| | || || |||||| Sbjct 12721038 GACACCATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 12721097 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| | || || || | |||||| ||| Sbjct 12721098 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGATTACAAC 12721157 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || |||| ||| | || | || |||| Sbjct 12721158 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGTA 12721206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || |||||| | || |||||| || Sbjct 12721434 ATGCAAATCTTTGTTAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 12721493 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | ||||| || ||| | ||||||||| ||| | || || ||||| Sbjct 12721494 GATACCATTGACAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGACCA 12721552 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || || || || ||| | || || | | | || | || |||| Sbjct 12721553 GCAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAGGA-TGGACGCACCCTTGCTGACTATA 12721611 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||||||||||||||| ||| |||| || | ||| | || |||| Sbjct 12721612 ACATCCAAAAAGAATCGACTCTGCATTTGGTGCTCCGGCTGCGTGGTGGTA 12721662 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || ||||| ||| | || |||||| || Sbjct 12761288 ATGCAAATCTTTGTCAAGACACTAACTGGGAAGACGATAACCTTGGAGGTTGAAAGCTCG 12761229 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | ||| ||| ||||||||| | || || || ||| Sbjct 12761228 GATACCATAGATAATGTAAAGGCAAAAATTCAGGATAAGGAAGGCATTCCCCCTGATCAG 12761169 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | ||||| |||||||| || || | || || || | |||||||||| Sbjct 12761168 CAGAGGCTAATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACCCTTGCCGATTATAAC 12761109 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| ||||| || ||||| ||| | || | || |||| Sbjct 12761108 ATCCAAAAGGAATCAACTCTGCACCTGGTGCTTCGGTTGCGTGGTGGTA 12761060 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || ||| ||| Sbjct 1215037 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAAAGCTCC 1214978 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||||||||||| | || || |||||| Sbjct 1214977 GACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGTATCCCCCCAGACCAG 1214918 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || ||||| ||||| ||| |||| || Sbjct 1214917 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGA 1214883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || ||||| || |||||| | || || || | || Sbjct 1215265 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAGTCATCT 1215206 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 1215205 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCAG 1215146 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| | || ||| || | || || ||| Sbjct 1215145 CAGCGTCTCATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGTACCCTCGCAGACTACAAC 1215086 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || ||| |||| || | ||| | || |||| Sbjct 1215085 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGTGGTGGTA 1215037 >seq3 Length=27368013 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| || || || || || || || || ||| | || ||||| | Sbjct 289216 AAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATAACCCTAGAGGTTGAGTC 289275 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | || ||| | || |||||||| ||| | || || || Sbjct 289276 TTCCGACACCATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGA 289335 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATT 31367 |||||| ||||| || ||||| || || ||| | || ||| || | ||| || | Sbjct 289336 CCAGCAACGTCTCATCTTCGCAGGGAAGCAGCTCGAGGACGGCCGAACCCT-AGCTGACT 289394 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || || ||||||||||| || ||||| ||| Sbjct 289395 ACAACATCCAGAAGGAATCGACTCTGCACCTGGTGCTT 289432 >seq2 Length=30405870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/237 (69%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || || || ||||| || || ||| | || || || || Sbjct 22654633 CATGCAGATATTTGTGAAAACCCTTACTGGCAAGACTATAACCCTTGAGGTGGAGAGCTC 22654574 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | | || | ||||| || ||| || ||| ||||| || | ||||| |||| Sbjct 22654573 GGACACTATTGATATTGTCAAGACTAAGA-TACAGGATAAGGAGGGGATTCCGCCTGACC 22654515 Query 31311 AGCAGCGTCTAAT--------ATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG 31362 ||||| | || || ||| ||||| || || |||||||| || |||| || Sbjct 22654514 AGCAGAGGCTTATTAAGTTATATTTGCTGGAAAGCAATTGGAAGATGGTAGGACTTTGGC 22654455 Query 31363 CGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||||| || ||||| ||| | || || || || || | ||||| || Sbjct 22654454 TGATTATAACATTCAGAAGGAATCTACTTTGCACCTTGTTCTCCGATTAAGGGGTGG 22654398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765330160640