Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq6 116 5e-21 seq8 91.5 2e-13 >seq3 Length=27368013 Score = 167 bits (184), Expect = 3e-36 Identities = 393/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || ||||| |||||||||| |||||| |||| ||||| ||||| || | Sbjct 26803541 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 26803482 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 |||| ||||| ||||||| || ||||| || ||||||||||| | || || | || Sbjct 26803481 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTGCCC 26803423 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33751 || ||||| || ||||| || ||||||||| | | || | |||| || || || Sbjct 26803422 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 26803365 Query 33752 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 26803364 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 26803305 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 |||| | ||| || ||| || || | || || | || || || | | || | Sbjct 26803304 TGGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGC 26803245 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 | ||||| || || || ||||| || ||||| ||||| || |||||||| | ||||| Sbjct 26803244 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCT 26803185 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| | ||| ||||| | || | | | || | ||| || || || || ||| Sbjct 26803184 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCAAGATTCTCCAAAACGATGCCGTCAG 26803125 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||| || || || || | || || | || || | || ||| | || ||||| | | Sbjct 26803124 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTT 26803065 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||||| | || | | | ||| || || || | ||||| || || ||||| | Sbjct 26803064 CCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 26803005 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 |||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 26803004 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 26802958 >seq6 Length=30767194 Score = 116 bits (128), Expect = 5e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||| Sbjct 14680454 CCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGG 14680513 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 || ||| || || ||| | ||||| || || ||||||| || |||||||||| || Sbjct 14680514 AACAATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 14680573 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || || | ||| ||||| || ||| ||| ||| | || ||| || || || Sbjct 14680574 GTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGT 14680633 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| |||||||| ||||||||||| ||||| || || || |||||| Sbjct 14680634 ATCATAAATGCCTTCAATGCTATCATCTTTCATGCAAACGAGGAAGCAGCTA 14680685 >seq8 Length=22573980 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||| || | ||| |||| ||| || | ||||| | || | | || Sbjct 3580290 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 3580231 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | | ||| || || || || | ||| || || || || | || | ||| | Sbjct 3580230 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 3580172 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||||||||| || ||||| ||||| || | |||| || || | |||||| | || | Sbjct 3580171 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 3580112 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 3580111 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 3580063 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 63198 TCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 ||||||||||||| | || | |||| |||| ||||| | ||| ||||| | || Sbjct 3581169 TCTCCCCAAACATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTGCCCA 3581110 Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317 ||| | | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 3581109 TCACCTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTCGA 3581050 Query 63318 GTTCTATGTTCCTC 63331 | | |||||| || Sbjct 3581049 GCCCGATGTTCTTC 3581036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816088437760