Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 170 3e-37 seq6 134 2e-26 seq8 96.9 5e-15 >seq3 Length=27368013 Score = 170 bits (188), Expect = 3e-37 Identities = 395/588 (67%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||| |||||||||| |||||| |||| |||| ||||| || | Sbjct 26803541 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 26803482 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC--CC 50069 |||| ||||| ||||||| || ||||| || ||||||||||| | |||||| || || Sbjct 26803481 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAA-AACTGCC 26803424 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 || ||||| || ||||| || |||||||| || | || | |||| || | || Sbjct 26803423 CGAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCT 26803366 Query 50130 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | | | ||||| | | ||||| | ||||||||| | || || || || || || Sbjct 26803365 GAGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCG 26803306 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||| | ||| || ||| || || | || || | || || || | | || Sbjct 26803305 ATGGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGG 26803246 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| || || || ||||| || ||||| ||||| || |||||||| | |||| Sbjct 26803245 CTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCC 26803186 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | ||| ||||| | || | | | || | ||| || || || |||||| Sbjct 26803185 TCGGAGACCTGGACTTCCTTCATGAACCTTCCGGCAAGATTCTCCAAAACGATGCCGTCA 26803126 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | || || | || || || || ||| || ||||| | Sbjct 26803125 GAGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTT 26803066 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||||| | || | | | ||| || || || | ||||| || || ||||| Sbjct 26803065 TCCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCG 26803006 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 ||||| || ||||| | |||||| || | |||||||| ||||| ||| Sbjct 26803005 GCCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 26802958 >seq6 Length=30767194 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||||| Sbjct 14680457 TTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGGAAC 14680516 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 ||| ||||||||||| ||||| || || |||||||| || |||||||||| || Sbjct 14680517 AATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTG 14680576 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 || || | ||| ||||| || ||| ||| ||| | || ||| || || ||||| Sbjct 14680577 AACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGTATC 14680636 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||| ||||| || ||||||||||| ||||| || || || |||||| Sbjct 14680637 ATAAATGCCTTCAATGCTATCATCTTTCATGCAAACGAGGAAGCAGCTA 14680685 >seq8 Length=22573980 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 79870 TCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCA 79929 |||||||||||||| |||| |||||| || | ||||| | ||| ||||| | ||| Sbjct 3581169 TCTCCCCAAACATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTGCCCA 3581110 Query 79930 TCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 79987 ||| | | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 3581109 TCACCTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTC 3581052 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||| || | ||| |||| ||| || | ||||| | |||| | || Sbjct 3580290 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 3580231 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | | ||| || || || || | ||| || || || || | || | ||| | Sbjct 3580230 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 3580172 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||||||| || ||||| || ||||| | ||||| || || | ||| || | || | Sbjct 3580171 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 3580112 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 3580111 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 3580063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267076154880