Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 3e-14 seq6 84.2 2e-11 >seq4 Length=25843236 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| |||| |||||| || | ||||| || | Sbjct 1214355 CCACCACGGAGACGAAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCA 1214414 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || |||| || || || ||||| ||||| | || || || | || Sbjct 1214415 AGGGTACGGCCATCCTCCAGCTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGG 1214474 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| | | ||||| || ||| ||||| | ||| |||||| Sbjct 1214475 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTC-CGAGCTCTCGAC 1214533 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || || || ||||||||||| ||||| Sbjct 1214534 CTCCAGAGTGATGGTCTTTCCCGTCAGGGTCTTCACAAAAATCTGCAT 1214581 >seq6 Length=30767194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||||| | ||||| || | ||| |||||||| | ||||| |||| Sbjct 23848420 CCACCTCTCAGTCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGGCG 23848361 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||||||| || |||||||||||||| | ||| || || | || Sbjct 23848360 AGGGTTCGGCCGTCCTCCAATTGCTTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGG 23848301 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | || || || | | || || ||| |||||| Sbjct 23848300 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTATC-AGAGCTCTCGAC 23848242 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| || || |||||||| ||||| || || |||||||| Sbjct 23848241 TTCTAGGGTTATGGTCTTCCCGGTTAGGGTTTTGACGAAGATTTGCAT 23848194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368707595136