Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 seq6 131 2e-25 seq8 100 4e-16 >seq3 Length=27368013 Score = 167 bits (184), Expect = 3e-36 Identities = 393/587 (67%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||| |||||||||| ||||||||||| ||||| ||||| || | Sbjct 26803541 ACAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCATCTCGCGAGATTAACTCGTTTGAGA 26803482 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCA 42175 |||| ||||| ||||||| || ||||| || ||||||||||| | |||||| | || Sbjct 26803481 ACGTCAGTCCCGGCATTAACCCGCGCTTCTTTAGCCAAAATATCG-CGCAAAAACTGCCC 26803423 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT- 42234 || ||||| || ||||| || |||||||| | | || | |||| || || || Sbjct 26803422 GAGAAGAATATCCCTTCCACGCAAGCAAAGGCCACGA-TC-CGCTCCGCAAACGATTCTG 26803365 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | | | ||||| | | ||||| | ||||||||| | || || || || || || | Sbjct 26803364 AGCCGTCGATCCAGCGTAGGGCCCACTGGGCCTTCTTCGTGACGCAGGGAATGGTATCGA 26803305 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 |||| | ||| || ||| || || | || || | || || || | | || | Sbjct 26803304 TGGCGTGAAAAAGCCTGTTCTTCTCGTCCGAGTCCTTGATGTAGGTCTCCAGAAGGAGGC 26803245 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | ||||| || || || ||||| || ||||| ||||| || |||||||| | |||| Sbjct 26803244 TGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCT 26803185 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 ||| ||||| ||||| | || | | | || | ||| || || || |||||| Sbjct 26803184 CGGAGACCTGGACTTCCTTCATGAACCTTCCGGCAAGATTCTCCAAAACGATGCCGTCAG 26803125 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 ||| || || || || | || || | || || | || ||| | || |||| | | Sbjct 26803124 AGGCAGCGAAGAAGGCGAGCACGTGGGTGATGAAGTGCTTCTCGCCAGGGGTTAGAGTTT 26803065 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||||| | || | | | ||| || || || | ||||| || || || || | Sbjct 26803064 CCCAATGGCGTAGGTCCTGGCAGAGATCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGG 26803005 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 |||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 26803004 CCTTCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATA 26802958 >seq6 Length=30767194 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || |||| ||| || ||||| | || | ||| || | |||| |||||| ||||||||| Sbjct 14680454 CCTTTTGCCTCCCCCTTGATCAACATAACGAGCTGTATCATTAAAAACTCGCAACATTGG 14680513 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 || ||| |||||||||| ||||| || || |||||||| || |||||||||| || Sbjct 14680514 AACAATGCCATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTT 14680573 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 | || || | ||| ||||| || ||| ||| ||| | || ||| || || || Sbjct 14680574 GTGAACAGAGACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACATTCCTTCAAAGT 14680633 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 |||||| ||||| || || |||||||| ||||| || || || |||||| Sbjct 14680634 ATCATAAATGCCTTCAATGCTATCATCTTTCATGCAAACGAGGAAGCAGCTA 14680685 >seq8 Length=22573980 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||| || | ||| |||| ||| || | ||||| | |||| | || Sbjct 3580290 AGTTCCTCCATTGAAAAGGGTCGGAGTAGCATGAATGAACCAACGCTGGGACATCAAATG 3580231 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | | ||| || || || || | ||| ||||| || || | || | ||| | Sbjct 3580230 GTAGGTTTGGAGAGCAGACTCGATGTCATCCTTG-TGTATACCAACAGAAACCCTCATCA 3580172 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| ||||| || ||||| || ||||| | ||||| || || | |||||| | || | Sbjct 3580171 ACATGTGCTGCGGCCTTTCCACAATCTTCTCATTTACCTTTAAAAGGTAGGACCTCTCTA 3580112 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||| |||| || |||||||| ||| ||||| || Sbjct 3580111 GAGTTTTAAAACCAAAGTAGTCATAATCAAAGTCTCTTTCATAAATGAT 3580063 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 71953 TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 ||||||||| ||| |||| |||||| ||||| ||||| | ||| ||||| | ||| Sbjct 3581169 TCTCCCCAAACATCAGCTAAGCCAGGAGCCTCATTTGGACAAAACAAAGACCATTGCCCA 3581110 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 ||| | | |||| || ||| ||||||||||||||||| ||||| ||||||||||| Sbjct 3581109 TCACCTTGGACTCTTTCCATGAAGAGATCAGGAATCCAGAGAGCATAAAATAGATCTC 3581052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137589265920