Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq4 91.5 1e-13 seq1 91.5 1e-13 >seq6 Length=30767194 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| || || | || || || ||||| || ||||| ||| Sbjct 23848192 CCACCTCTCAATCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATATTGTAGTCGGCA 23848133 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | |||| || ||||| ||||| ||| | ||||| | || ||||| || Sbjct 23848132 AGGGTGCGGCCGTCCTCCAATTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 23848073 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| |||||| ||| || | || |||||||| | || || Sbjct 23848072 ATGCCCTCCTTGTCTTGGATTTTGGCCTTCACGTTGTCGATGGTATCAGAGCTCTCGACT 23848013 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || || || || ||||| || || || |||||| Sbjct 23848012 TCTAAGGTTATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATA 23847965 >seq4 Length=25843236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || || | || || || || ||||| || ||||| |||||||| || Sbjct 12722116 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 12722057 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | || || | || ||||| || | ||||| | || ||||| ||| Sbjct 12722056 AGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 12721997 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| |||||| ||| ||| | || || ||||| |||| || Sbjct 12721996 ATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTCCACT 12721937 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 12721936 TCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCATA 12721889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || ||||| ||||| || || || | || | || || Sbjct 12721870 ACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCAAGGGTCCTTCCATCCTCG 12721811 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | || ||||| ||||| || || ||||| Sbjct 12721810 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 12721751 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || || ||||| |||| || || | ||||||||||| Sbjct 12721750 ATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTCCACTTCCAGAGTAATGGTTTTC 12721691 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||| ||||| || |||||| Sbjct 12721690 CCGGTCAGAGTTTTCACAAATATCTGCATA 12721661 >seq1 Length=47851208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || |||||||||||| ||| ||| |||| || | || Sbjct 26252844 TGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGC 26252903 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | || || ||||| ||||| || || ||||| || ||| Sbjct 26252904 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 26252963 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || |||||||| || || |||| ||||||||| ||||| || Sbjct 26252964 GCCTTCACATTGTCGATGGTATCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTT 26253023 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||| || || || ||||| |||| Sbjct 26253024 AGGGTTTTCACGAAGATCTGCATGTTTG 26253051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178352500672