Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq4 91.5 1e-13 seq7 82.4 6e-11 seq2 82.4 6e-11 >seq6 Length=30767194 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || ||||||||||| || ||||||||||| | ||| | |||||||| Sbjct 23848630 ACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGGGTTCTACCGTCCTCC 23848571 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | || ||||| || | ||||| ||||||||||| ||| | ||||| ||||| Sbjct 23848570 AATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGG 23848511 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | |||||| ||| || | ||||| ||||| Sbjct 23848510 ATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACCTCCAGAGTAATTGTTTTC 23848451 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||||| ||||| ||||| Sbjct 23848450 CCGGTTAGGGTTTTGACGAAAATCTGCAT 23848422 >seq4 Length=25843236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||||||||||||||| || || | || | | ||||| Sbjct 12760851 CACCAAGTGCAGGGTCGACTCCTTTTGAATATTGTAGTCGGCAAGGGTCCTTCCATCCTC 12760910 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || | |||||||| || || | ||||| ||||| Sbjct 12760911 CAGCTGCTTGCCTGCAAATATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCCTG 12760970 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| || || | | | | |||||| ||| ||| | ||||| || || Sbjct 12760971 GATTTTGGCCTTCACATTGTCAATAGTATCTGAGCTTTCCACTTCCAAAGTAATCGTCTT 12761030 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| |||||||| Sbjct 12761031 CCCAGTCAAAGTTTTCACAAAGATTTGCAT 12761060 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||||||||| ||||| |||||||| || | || | ||||||||||||| ||||| Sbjct 12760636 GTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCG 12760695 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || |||||||| ||| || | |||||| ||||| ||| || ||| Sbjct 12760696 GCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGCTTTC 12760755 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| | |||| || | || || || || || || | ||| Sbjct 12760756 ACATTATCAATGGTATCAGAACTCTCCACCTCCAAAGTTATCGTCTTCCCAGTCAGAGTC 12760815 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| || ||||| Sbjct 12760816 TTCACAAAGATCTGCAT 12760832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||||||||| ||||| || || | || | | ||||| Sbjct 12722099 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC 12722040 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || | |||||||| || ||| | ||||| ||||| Sbjct 12722039 GAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 12721980 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 ||||| || || | | | ||||| ||| || ||| ||| | |||||||| Sbjct 12721979 GATTTTGGCCTTAACATTATCAATAGTAT---CAGAGCTTTCCACTTCCAGAGTAATGGT 12721923 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | |||||| ||||| || ||||| Sbjct 12721922 TTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721890 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| || | ||||| ||||| || |||||||||||||| || || || || Sbjct 12721888 CCACCACGCAGCCGGAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCA 12721829 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || ||| | || | |||||||| || ||| Sbjct 12721828 AGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 12721769 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||||| ||||| ||||| || || | | | ||||| ||| || ||| Sbjct 12721768 ATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTAT---CAGAGCTTTCC 12721712 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||||||||| || || | |||||| ||||| || ||||| Sbjct 12721711 ACTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721662 >seq7 Length=22388614 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| || |||| ||| | ||| |||||||| || || || ||||| | Sbjct 12116139 TTCCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTG 12116198 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | | ||||||| || ||||| ||| |||| | |||||||||||| Sbjct 12116199 CAAGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGATC 12116253 >seq2 Length=30405870 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||| || || || || ||||| |||| || ||||||| || || Sbjct 22653256 GTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGCCAGGGTACGTCCGTCCTCAAGTTG 22653315 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || |||||||||||| || | ||||||||||| ||||| Sbjct 22653316 CTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGAGGGATACCCTCTTTGTCTTGGATTTT 22653375 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | | | | |||||| | ||| || | || || || || || || Sbjct 22653376 AGCTTTCACATTGTCAATTGTATCGGAACCCTCAACATCAAGAGTGATTGTCTTCCCCGT 22653435 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 | ||||| |||||||| |||||| Sbjct 22653436 CAGAGTTTCAACAAAAATCTGCATT 22653460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414571829899648