Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-28 seq7 109 9e-20 seq2 107 3e-19 seq5 104 4e-18 >seq6 Length=30767194 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || ||||||||||| || || |||||||||||||| | ||||| | Sbjct 5510899 GAGATAACATCCAGGGCATCACCAAGCCTGCGATTCGTCGTCTGGCTCGCAGAGGTGGTG 5510958 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||| || |||| | | || | |||||||| ||| Sbjct 5510959 TGAAGCGTATCAGTGGTCTGATCTACGAGGAGACCAGAGGCGTCCTCAAGATCTTTCTCG 5511018 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | || || |||||||| | | |||||||| ||| Sbjct 5511019 AGAATGTGATTCGTGATGCAGTGACTTACACTGAGCACGCCAGGAGGAAGACTGTGACCG 5511078 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| ||||| | || || | | | ||||||||||| ||| Sbjct 5511079 CCATGGATGTGGTGTATGCTTTGAAGAGGCAGGGAAGGACCCTCTATGGTTTTGGGGGTT 5511138 Query 16698 A 16698 | Sbjct 5511139 A 5511139 Score = 131 bits (144), Expect = 3e-26 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || |||||||| |||||| | ||||| || Sbjct 24643563 GATAACATCCAGGGCATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTAGGGGTGGCGTG 24643504 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| || |||| |||| || | |||||||||||| || Sbjct 24643503 AAGCGTATCAGTGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTCCTCGAG 24643444 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || ||| | ||| || |||||||| | ||||| || || || Sbjct 24643443 AATGTGATCCGAGACGCTGTGACCTACACAGAGCACGCCCGGAGGAAGACGGTGACTGCC 24643384 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 24643383 ATGGATGTCGTCTATGC 24643367 >seq7 Length=22388614 Score = 109 bits (120), Expect = 9e-20 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || || | || |||||| | || ||||| Sbjct 5277373 GATAACATCCAAGGCATCACCAAGCCCGCCATTCGAAGACTTGCTCGTAGAGGCGGAGTG 5277314 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| | |||| ||||| | | | ||| | ||||||||| | || Sbjct 5277313 AAGCGCATCAGTGGCCTCATCTACGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 5277254 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||| | | ||||| || || || Sbjct 5277253 AATGTGATTCGCGATGCTGTGACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 5277194 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || || | | |||||||| ||| ||||| Sbjct 5277193 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGACGAACCCTCTATGGTTTCGGAGGTTAA 5277134 >seq2 Length=30405870 Score = 107 bits (118), Expect = 3e-19 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || |||||| |||| || || |||||| |||||||| | || Sbjct 25182777 CTTCGCGATAACATCCAGGGCATCACCGAGCCGGCCATTCGTCGTTTGGCTCGTAGAGGA 25182836 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | |||| | |||| |||| || | || |||||| Sbjct 25182837 GGTGTGAAGCGTATCAACGGTCTTATCTACTAGGAGACACGTGGCGTGCTCAAAATCTTC 25182896 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| ||| || || | ||| || |||||||| || ||||| || Sbjct 25182897 CTCGAGAACGTGATCAGCGACGCCATGACCTACACTAAGCACGCTCGCCGCAAGACGGTG 25182956 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| || | ||||| || ||||| Sbjct 25182957 ACGGCCATGAATGTGGTCTACGCCTTGAA 25182985 Score = 86.0 bits (94), Expect = 1e-12 Identities = 186/276 (67%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || ||| |||| |||||||| || ||||||||||| || || Sbjct 25578707 GCCAAGCGGCACCGTAAGGTC-CTTAGAGACAACATCCAGGGCATCACCAAGCCTGCGAT 25578649 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || | || || | | || || || ||| | || || | |||| ||||||| Sbjct 25578648 TCGAAGGCTCGCCAGAAGAGGAGGCGTGAAGAGAATCAGCGGCCTCATCTACGAAGAGAC 25578589 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | |||| | ||||||||| | ||| ||| || | || || | ||| ||||| Sbjct 25578588 CAGAGGTGTTCTCAAGATCTTCTTGGAGAACGTGATTCGCGACGCCGTGACCTACACCGA 25578529 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| | ||||| || ||| |||||||| | ||||| || | || | || || Sbjct 25578528 GCACGCTCGGAGGAAGACGGTGACCGCCATGGATGTTGTCTACGCGCTCAAGAGGCAGGG 25578469 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAA 16707 | | | | || || || || |||||| || ||| Sbjct 25578468 CAGGACCTTGTACGGATTCGGGGGTTAATTTTGTAA 25578433 Score = 84.2 bits (92), Expect = 3e-12 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| |||| |||||||| || ||||||||||| || || || | || || | | || Sbjct 25588467 CTTAGAGACAACATCCAGGGCATCACCAAGCCTGCGATTCGAAGGCTCGCCAGAAGAGGA 25588408 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | |||| ||||||| | | |||| | ||||||||| Sbjct 25588407 GGCGTGAAGAGAATCAGCGGCCTCATCTACGAAGAGACCAGAGGTGTTCTCAAGATCTTC 25588348 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || | ||| |||||||||||| | ||||| || Sbjct 25588347 TTGGAGAACGTGATTCGCGACGCCGTGACCTACACCGAGCACGCTCGGAGGAAGACGGTG 25588288 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||| | ||||| || | || | || ||| | | | || || || || Sbjct 25588287 ACCGCCATGGATGTTGTCTACGCGCTCAAGAGGCAGGGCAGGACCTTGTACGGATTCGGG 25588228 Query 16694 AGTTAATCTTCTAA 16707 |||||| || ||| Sbjct 25588227 GGTTAATTTTGTAA 25588214 >seq5 Length=18496696 Score = 104 bits (114), Expect = 4e-18 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||||||||| || || || | || |||||| | || ||||| Sbjct 12798759 GATAACATCCAAGGCATCACCAAGCCCGCCATTCGAAGACTTGCTCGTAGAGGCGGAGTG 12798818 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || || | |||| ||||| | | | ||| | ||||||||| | || Sbjct 12798819 AAGCGCATCAGCGGCCTCATCTACGAAGAAACCAGAGGGGTTCTCAAGATCTTCTTGGAG 12798878 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| | || || |||||||| | | ||||| || || || Sbjct 12798879 AATGTGATTCGCGATGCTGTGACTTACACTGAGCACGCCAGGAGGAAGACGGTGACTGCC 12798938 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| | || | || || || | | |||||||| ||| ||||| Sbjct 12798939 ATGGATGTGGTCTATGCTCTCAAGAGGCAGGGACGAACCCTCTATGGTTTCGGAGGTTAA 12798998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075024453056