Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-22 seq2 114 1e-20 seq6 105 6e-18 >seq4 Length=25843236 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| |||||| | ||||| || ||||||| | || || ||| || Sbjct 12761517 AATGCAAATCTTTGTCAAGACTCTCACCGGAAAGACCATCACTTTGGAGGTTGAGAGCTC 12761458 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | || | ||| || ||| |||||||| || |||||||| |||| Sbjct 12761457 CGACACGATTGA-TAACGTCAAGGCTAAGATCCAAGACAAAGAGGGCATTCCACCAGACC 12761399 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || | || |||| ||||| | | ||||||| Sbjct 12761398 AGCAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTAGCTGATTACA 12761339 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||||| || || || || || |||||||| Sbjct 12761338 ATATCCAAAAGGAGTCAACCCTTCACTTAGTGCT 12761305 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || |||||||| || || | || || | |||||||| || Sbjct 12761060 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACGATTACTTTGGAAGTGGAAAGCTCA 12761001 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || ||||| |||||| ||||| || || || || || ||||| Sbjct 12761000 GATACTATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 12760941 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | || |||| | || | | ||| |||||| Sbjct 12760940 CAGAGGTTGATATTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAAT 12760881 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || || || ||||| Sbjct 12760880 ATTCAAAAGGAGTCGACCCTGCACTTGGTGCT 12760849 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | ||||| | ||||| || || Sbjct 12721434 ATGCAAATCTTTGTTAAGACCCTTACTGGGAAGACAATCACCTTGGAAGTTGAAAGCTCG 12721493 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || || || ||| ||| ||| ||||| || || ||||| || |||| Sbjct 12721494 GATACCATTGA--CAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACC 12721551 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||| || || | || |||| ||||| | | || || | Sbjct 12721552 AGCAGAGGCTCATCTTTGCCGGTAAGCAGCTTGAGGATGGACGCACCCTTGCTGACTATA 12721611 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 | || ||||||||||| || || ||||| ||||| |||| Sbjct 12721612 ACATCCAAAAAGAATCGACTCTGCATTTGGTGCTCCGGCT 12721651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| || || ||||||||||| || | |||||||| || || ||||| ||| Sbjct 7555542 GATAAGGAAGGCATCCCTCCTGACCAACAACGATTGATTTTTGCTGGTAAGCAATTGGAA 7555483 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| ||| | | ||||| || || ||||| || || | ||| || || || | Sbjct 7555482 GATGGTCGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGATGCTTCACTTGGTTTTG 7555423 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 7555422 AGGCTGAGGGGAGGAA 7555407 >seq2 Length=30405870 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||| ||||||| || || | ||||| | || |||||| || Sbjct 22654143 ATGCAAATATTTGTCAAGGCTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 22654084 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| ||||| |||||||| ||||||||||| Sbjct 22654083 GATACCATAGACAATGTGAAGGCAAAGATTCAA-GACAAGGAAGGGATCCCACCTGACCA 22654025 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||||||||| || || || | || |||| | ||| ||| ||||| || Sbjct 22654024 ACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 22653965 Query 25178 TATTCAAAAAGAATC 25192 ||| || || ||||| Sbjct 22653964 TATCCAGAAGGAATC 22653950 Score = 109 bits (120), Expect = 5e-19 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||| ||| Sbjct 22653687 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACCATCACTCTTGATGTGGAGAGCTCT 22653628 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | ||||| | ||| || || |||||||| ||||||||| Sbjct 22653627 GATACCAT--AGGCAATGTGAAGGCAAAGATTCAA-GATAAGGAAGGGATCCCACCTGAC 22653571 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || |||||||||| || || || | || |||| | ||| ||| ||||| Sbjct 22653570 CAACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTAT 22653511 Query 25176 AATATTCAAAAAGAATCCAC 25195 ||||| || || ||||| || Sbjct 22653510 AATATCCAGAAGGAATCTAC 22653491 Score = 100 bits (110), Expect = 2e-16 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||||||||| || || | ||||| | || |||||| || Sbjct 22653915 ATGCAAATATTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 22653856 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| || ||| |||| || || |||||| Sbjct 22653855 GATACCAT--AGACAATGTCAAGGCGAAGATTCA-AGATAAACAAGGAATCCCTCCTGAC 22653799 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||||||||| || || || |||| |||| | | || | | ||||| Sbjct 22653798 CAGCAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTAT 22653739 Query 25176 AATATTCAAAAAGAATCCAC 25195 ||||| || || ||| |||| Sbjct 22653738 AATATCCAGAAGGAACCCAC 22653719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||||| || | ||||| | || |||||| || Sbjct 22654396 ATGCAAATATTTGTTAAGACGCTGACCGGAAAGACTATCACTCTTGAGGTGGAGGGTTCG 22654337 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || | || || || | ||||| | ||| |||||||| || |||||||| ||| Sbjct 22654336 GATACCA--CAGACAATGTCAAGGCAAAGATTCA-AGACAAAGAGGGAATTCCACCAGAC 22654280 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 | ||| || ||| ||||| || || || || ||||||| | | ||| Sbjct 22654279 CCGCAGAGGCCTATATTTGCTGGAAAGCAGTTGGAAGATGGTAGGACT 22654232 >seq6 Length=30767194 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || |||| || | || || ||| ||| Sbjct 23848878 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATTACTCTGGAGGTTGAGAGCTCT 23848937 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || |||| || | ||| ||||| || ||||| ||||| ||| Sbjct 23848938 GACACTATTGA--CAATGTCAAAGCTAAGATTCA-AGACAAGGAGGGGATCCCACCGGAC 23848994 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || |||||||| ||||| | || |||| ||| || | | ||||| Sbjct 23848995 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTTGAGGATGGTCGTACCCTTGCAGATTAT 23849054 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| || || || ||| | || || Sbjct 23849055 AATATCCAGAAAGAGTCTACTCTCCATCTTGTCCT 23849089 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| || |||| || | ||||| ||| ||| Sbjct 23848194 ATGCAAATCTTCGTCAAAACCCTAACCGGGAAGACCATAACCCTAGAAGTCGAGAGCTCT 23848253 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 23848254 GATACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCAGACCAG 23848313 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||||||||| || ||||| || || | || || | | ||| ||||| Sbjct 23848314 CAGAGGTTGATTTTTGCCGGAAAGCAATTGGAGGACGGCCGAACCCTCGCCGACTACAAC 23848373 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||| || | || || || || | || ||||| || Sbjct 23848374 ATCCAAAAGGAATCGACTTTGCACTTGGTTCTCCGACTGAGAGGTGG 23848420 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| ||||||| || | ||||| | | ||| || || Sbjct 19728616 ATGCAAATATTTGTTAAGACGCTGACCGGAAAGACTATCACTCTTAAGGTGAAGGGTTCG 19728675 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || | || || | ||| || |||||||| || || |||||| Sbjct 19728676 GATACCAT--AGACAATGTCAAGGCGAAGATTCA-AGATAAAGAAGGAATCCCTCCTGAC 19728732 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || |||||||||| || || || |||| |||| | | || | | ||||| Sbjct 19728733 CAGCAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTAT 19728792 Query 25176 AATATTCAAAAAGAATCCAC 25195 | || || || |||||||| Sbjct 19728793 AGCATCCAGAAGGAATCCAC 19728812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326986012480