Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 9e-15 seq2 86.0 4e-12 >seq4 Length=25843236 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || || || || ||||| ||||| |||| | || Sbjct 12761060 ATGCAAATCTTTGTGAAAACTTTGACTGGGAAGACGATTACTTTGGAAGTGGAAAGCTCA 12761001 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||| || || |||||| | ||| | |||| Sbjct 12761000 GATACTATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGTATCCCTCCAGACCAG 12760941 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || ||||| ||||| || || || ||| || || | ||||| |||||| Sbjct 12760940 CAGAGGTTGATATTTGCAGGCAAGCAGCTGGAGGATGGAAGGACCCTTGCCGACTACAAT 12760881 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || || || |||| | ||| | || || || Sbjct 12760880 ATTCAAAAGGAGTCGACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 12760834 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || || ||||||||||| ||||| |||| | | Sbjct 12721890 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721949 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| || || |||||| | || | |||| Sbjct 12721950 GATACTATTGATAATGTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 12722009 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| ||||| || || || ||| || || | || || ||||| Sbjct 12722010 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTACAAC 12722069 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| ||||| || ||||| || |||| Sbjct 12722070 ATTCAAAAGGAGTCCACTCTGCACTTGGT 12722098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | ||||| | || || ||||||||||| ||||| |||| | | Sbjct 12721662 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721721 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| || || |||||| | || | |||| Sbjct 12721722 GATACTATTGATAATGTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 12721781 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||| ||||| || || || ||| || || | || || || || Sbjct 12721782 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTATAAC 12721841 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| ||||| || ||||| || |||| Sbjct 12721842 ATTCAAAAGGAGTCCACTCTGCACTTGGT 12721870 >seq2 Length=30405870 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| |||| || || |||||||| ||||| || | || ||| | | Sbjct 22653687 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACCATCACTCTTGATGTGGAGAGCTCT 22653628 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| ||| ||| ||||| || || | ||||| || Sbjct 22653627 GATACCATAGGCAATGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCTG---AC 22653571 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| || ||||| ||||| || || || || || ||| | ||| |||| ||||| Sbjct 22653570 CAACAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTAT 22653511 Query 22011 AATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| ||||||||||||||| | ||| Sbjct 22653510 AATATCCAGAAGGAATCTACTTTGCAT 22653484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358123961987968