Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 1e-13 seq6 87.8 1e-12 seq4 87.8 1e-12 >seq7 Length=22388614 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| || ||||| |||||||| ||||||||| ||||| |||||||| Sbjct 12116141 CCTCCCCTCAGCCTCAAAACCAGGTGAAGCGTTGACTCCTTCTGGATGTTATAATCTGCA 12116200 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || ||||||||||| || ||||| |||| | ||||||||| Sbjct 12116201 AGAGTTCGGCCATCCTCCAATTGCTTACCAGCAAAAATCAATCTCTGCTGATC 12116253 >seq6 Length=30767194 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| |||||||||||||| || ||| ||||| ||||||||||| ||| | ||| Sbjct 23848867 AGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCGCC-AGAGTCCT 23848809 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || ||||||||||| || ||||| ||||| | ||||||||| || | || || Sbjct 23848808 TCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTC 23848749 Query 34029 TTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGAT-TCGCATTCGA 34084 |||||| ||| || ||| | || | || |||||| || | ||| || | Sbjct 23848748 CTTGTCCTGAATCTTCGCCTTCACATTGTCAATC---GTATCAG-AGCTCTCGACCTCCA 23848693 Query 34085 CCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||||||| || || || || || ||||| || || ||||| Sbjct 23848692 AAGTTATTGTCTTCCCTGTAAGGGTCTTCACGAATATCTGCAT 23848650 >seq4 Length=25843236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/241 (69%), Gaps = 20/241 (8%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || || ||||| || ||||||||||||||||||||| Sbjct 12760602 GAAACCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATC 12760661 Query 33957 TGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 || ||| || | | |||| |||| ||||| |||||||| || || | |||||| ||| Sbjct 12760662 TG-CAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCG 12760720 Query 34016 CCGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATT 34075 || | || ||| |||| | | | | || |||| ||||| ||||| | | | Sbjct 12760721 GAGGAATGCCCTCCTTGT-CTTGAATCTTGGCTT--------TCACATTATCAATGGTAT 12760771 Query 34076 C---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCA 34126 | | || ||| ||||| || || || || || || ||||||||||| |||| Sbjct 12760772 CAGAACTCTCCACCTCCAAAGTTATCGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCA 12760831 Query 34127 T 34127 | Sbjct 12760832 T 12760832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | |||||| ||||||| || || ||| |||||| |||||||| || || || Sbjct 12721889 ACCACCACGCAGCCGGAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGC 12721830 Query 33960 CAATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || || || | |||||||| ||||| |||| | |||||| || | Sbjct 12721829 -AAGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGG 12721771 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| ||||| ||||| | | | |||||| || || | Sbjct 12721770 GAATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAG-AGCTTTCC 12721712 Query 34079 A-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || ||||| ||||| || ||||||||||| || ||||| Sbjct 12721711 ACTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||| || || ||| |||||| ||||||||||| || | | Sbjct 12722116 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAG-C 12722058 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || || | |||||||| ||||| |||| | |||||| || || Sbjct 12722057 AAGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGG 12721998 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| |||||| ||||| ||||| | | | |||||| || || || Sbjct 12721997 AATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAG-AGCTTTCCA 12721939 Query 34080 -TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || ||||| ||||| || ||||||||||| || ||||| Sbjct 12721938 CTTCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061470873984