Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq1 89.7 6e-13 >seq3 Length=27368013 Score = 111 bits (122), Expect = 2e-19 Identities = 301/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||||| |||||||||||| || |||||||| | || |||||| |||||| Sbjct 26803819 GTACTCCCCAACCCTCTTCTCGAAGAAATTGGTCTTCCCCTGCAGGCTGATCAGCTCCAT 26803760 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 |||| || ||||||| || |||| | | ||||| || || || | Sbjct 26803759 CCAATCGAACGGGTTCTGCACATTGTAAATCTTCGAGTACCCAAGCTCACCCAGCAGCCT 26803700 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 ||||| ||| |||| ||||||| |||| || |||||| || | ||| || Sbjct 26803699 ATCCGCCACGAACTCGATGTACTGGCTCATCAGATCGCCGTTCATCCCCACTAGGGCGCA 26803640 Query 125938 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG-CGT 125996 || | || || | | |||| | |||| || ||||| || | || | ||| | | | Sbjct 26803639 CGGTAAGGCTTCGCACACGAACTCTCTCTCTATCTCCACCGCGTTTCGTATGATCGACTT 26803580 Query 125997 GAATGGTGTCCACCC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 126054 | | | ||| | | ||| | | || | || | | | || |||| | || || Sbjct 26803579 CACTCGA-TCCTCGCTCAGCT-TCTTCCTCAGCAGCGAGTACAGCAAGCACG-CGAAGTC 26803523 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||| || || ||||| | || || ||||| |||||| ||||| | Sbjct 26803522 GCAGTGCAAACCCTCATCTCGCGAGATTAACTCGTTTGAGAACGTCAGTCCCGGCATTAA 26803463 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 || |||||||| | ||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 26803462 CCCGCGCTTCTTTAGCCAAAATATCGCGCAAAAACTGCCCGAGAAGAATATCCCTTCCAC 26803403 Query 126175 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || || || | || ||||| ||||| || Sbjct 26803402 GCAAGCAAAGGCCACGATCCGCTCCGCAAACGA 26803370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 177/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| || || | ||| ||||| || | |||| ||| || || | | ||||| Sbjct 9413064 GTCAAGAATGTCTGCCCTGTTAGTCGCTGCAACCACAATGATACCAGTGTTGCCCTCAAA 9413005 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || ||||| || ||||| | ||||||||| | ||||||||| | | Sbjct 9413004 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTTTGTTCTCTTTCATCATTTCC---CCC 9412948 Query 10939 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || | | | |||| || || || ||||||||||| | || || || || Sbjct 9412947 ACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 9412888 Query 10996 CGGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 ||| ||| || ||| |||| ||| | ||| || |||| ||||| ||||| Sbjct 9412887 AGGTGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGAACTCGGGAAGCACCAACACCA 9412830 Query 11054 ACAAACATTTCCACAAA 11070 ||||||||||| ||||| Sbjct 9412829 ACAAACATTTCAACAAA 9412813 >seq1 Length=47851208 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/283 (69%), Gaps = 12/283 (4%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||||||||||||||| ||||| || ||||| ||||| || || | ||||||||| | Sbjct 32999678 AAAGCCATCCATCTCCGTCAACAGCTGATTAATGGTCTGCTCCCTCTCATCATTCCC--A 32999735 Query 10936 CATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 10993 | | || ||| || | | ||| | || || || ||||| || || ||||| || || Sbjct 32999736 CCTCCCATACCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCGTCAATGAACACAATG 32999795 Query 10994 CACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||||| | ||| || ||| || || | || || |||||| ||||| || || Sbjct 32999796 CACGG-CGCTTTCGACTTGGCCTTCTCGAACAAGTCCCGCACTCTCGACGCACCCACTCC 32999854 Query 11053 CACAAACATTTCCACAAAAT-TG--GCGGCGGAACATTGGATGAAGGGGACGTTGGATTC 11109 |||||||| |||||| || | || || ||| || | || || || || | || Sbjct 32999855 CACAAACAATTCCACGAACTCTGAAGCTGCGCAAGA---GAAAAACGGCACCCCAGCCTC 32999911 Query 11110 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 || || | ||| || || || |||||||| || || |||||| Sbjct 32999912 GCCGGCCACGGCCCGAGCCAGAAGGGTCTTGCCGGTACCAGGT 32999954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352166351360