Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4 123 3e-23 seq1 89.7 6e-13 >seq4 Length=25843236 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | || |||||| || || ||||| || || || || || | Sbjct 1215050 ACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTACGGCC 1215109 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| ||||||||||| || ||||| ||||| ||||||||||| | || | || |||||| Sbjct 1215110 GTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTT 1215169 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| || |||| ||| | | | ||||| || ||||| || | |||| Sbjct 1215170 GTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGATGACTCCACCTCAAGGGTGA 1215228 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || || || || ||||||||||| Sbjct 1215229 TGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1215265 Score = 116 bits (128), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| |||||||||||||| || || || | || || |||||||| ||||| || Sbjct 12761325 CTCCTTTTGGATATTGTAATCAGCTAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAA 12761384 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||| | ||| | || ||| ||||| ||| || |||| | Sbjct 12761385 GATGAGCCTCTGCTGGTCTGGTGGAATGCCCTCTTTGTCTTGGATCTTAGCCTTGACGTT 12761444 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | |||||| |||| || || || | |||||||| || || || || ||||| Sbjct 12761445 ATCAATCGTGTCGGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGAGTCTT 12761501 Query 42194 TACAAAGATTTGCATT 42209 ||||||||||||||| Sbjct 12761502 GACAAAGATTTGCATT 12761517 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | | || || ||||||||||| || || Sbjct 12722309 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGCTTACCGGCAAA 12722250 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | || |||||||||| ||| | || | || | Sbjct 12722249 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACAT 12722191 Query 42136 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | ||| ||||| ||||| || || |||| Sbjct 12722190 TATCAATTGTATC---CGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCT 12722134 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 12722133 TCACAAAGATCTGCAT 12722118 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | ||| |||||| || || ||||| ||||| || || || | || || Sbjct 12707430 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTC 12707371 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| || ||||| | ||||||||| | || | || |||||||||| Sbjct 12707370 GAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 12707311 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGT 42175 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 12707310 GATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTCAACTTCCAAGGTGATTGT 12707254 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| |||||||||||||| Sbjct 12707253 CTTCCCGGTAAGGGTCTTGACAAAGATTTGCAT 12707221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || || | |||||| || | ||| |||||| || || ||||| || || Sbjct 12707676 ACCACCACGTAGTCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 12707617 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 12707616 AAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 12707557 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | || |||||||||| ||| ||| |||| | | | || || ||| ||| Sbjct 12707556 AATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATC---CGAGCTTTC 12707500 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || ||||| |||||||||||||| Sbjct 12707499 AACTTCCAAGGTGATTGTCTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 12707449 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||||| || || ||||| || || || ||||| || || || | || || Sbjct 12721643 CACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGTCCATCCTC 12721584 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||||||||| || || ||||| | ||||||||| | || | || |||||||||| Sbjct 12721583 AAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 12721524 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 ||| ||| |||| | | | || || ||| ||| || || | ||||| || Sbjct 12721523 GATCTTTGCCTTGACATTGTCAATGGTATCCGAGCT---TTCAACTTCCAAGGTGATTGT 12721467 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| |||||||||||||| Sbjct 12721466 CTTCCCAGTAAGGGTCTTAACAAAGATTTGCAT 12721434 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| || ||||||| | |||| || ||||||||||| || || Sbjct 12760641 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 12760700 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||| | ||||||||| | || | || |||||||| | ||| | || | ||| | Sbjct 12760701 GATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGT-CTTGAATCTTGGCTTTCACAT 12760759 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || ||| ||||| || | || || || || || || || |||| Sbjct 12760760 TATCAATGGTATCAGAACTC---TCCACCTCCAAAGTTATCGTCTTCCCAGTCAGAGTCT 12760816 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 12760817 TCACAAAGATCTGCAT 12760832 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || | || || | |||||| || | ||| |||||| || || ||||| || || Sbjct 12721433 ACCACCGCGTAGTCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 12721374 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| ||||| || ||||| | ||||||||| | || Sbjct 12721373 AAGGGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 12721314 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | | |||||||||| ||| ||| |||| | | | || || ||| ||| Sbjct 12721313 AATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATAGTATC---CGAGCTTTC 12721257 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || ||||| |||||||||||||| Sbjct 12721256 AACTTCCAAGGTGATTGTCTTCCCGGTAAGGGTCTTGACAAAGATTTGCAT 12721206 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||||| ||| | || | || |||||| ||||||||||| ||||| Sbjct 1214126 ACCACCCCTCAGACGCAGCACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAGC 1214185 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || |||| || |||||||| || || || || | | ||||||||| | ||| Sbjct 1214186 CAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGTGG 1214245 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| || || | | | | ||||| |||| || Sbjct 1214246 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCCGAGCTC---TC 1214302 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 1214303 GACCTCCAAAGTGATAGTCTTTCCGGTCAGGGTCTTCACGAAGATCTGCAT 1214353 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||| |||||||||||| ||||| ||||| || |||| | || || Sbjct 12722099 CACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC 12722040 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| || || || || | | ||||||||| | || | | |||||||||| Sbjct 12722039 GAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 12721980 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 |||||| || | | | | || || ||| |||||| || | || ||||| Sbjct 12721979 GATTTTGGCCTTAACATTATCAATAGTATCAGAGCT---TTCCACTTCCAGAGTAATGGT 12721923 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || || || ||||| || ||||| Sbjct 12721922 TTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721890 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||||||||||||||| || || || |||| | Sbjct 12760845 ACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATATTGTAGTCGGCAAGGGTCCTTCC 12760904 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || ||||| | | ||||||||| | || | | |||||| Sbjct 12760905 ATCCTCCAGCTGCTTGCCTGCAAATATCAACCTCTGCTGGTCTGGAGGGATACCCTCCTT 12760964 Query 42113 GTCCATGATTTT 42124 |||| |||||| Sbjct 12760965 GTCCTGGATTTT 12760976 >seq1 Length=47851208 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 26252856 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 26252915 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||||||||| | || | || ||||||||| ||| || || | | Sbjct 26252916 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 26252975 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | || || || || || || | || ||||| || |||||||| || || || Sbjct 26252976 TCGATGGTATCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 26253035 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 26253036 AAGATCTGCATGTT 26253049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211496289280