Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 107 2e-18 seq2 89.7 5e-13 seq3 87.8 2e-12 seq6 86.0 6e-12 >seq4 Length=25843236 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 12760606 CCGCCACGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCA 12760665 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| || || ||||||| | |||| || | ||| ||||||||||| Sbjct 12760666 AGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGA 12760725 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | ||| | | || | ||| || | |||||| Sbjct 12760726 ATGCCCTCCTTGTC-TTGAATCTTGGCTTTCACATTATCAATGGTATCAGAACTCTCCAC 12760784 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || ||||||||||| || ||||| |||||||| Sbjct 12760785 CTCCAAAGTTATCGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 12760832 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | |||||||||| || ||||||||||| Sbjct 1215039 CCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCG 1215098 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| || || || |||| |||| |||||||| ||||| ||||| Sbjct 1215099 AGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGG 1215158 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 1215159 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGATGACTCCACC 1215218 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| || || || ||||| Sbjct 1215219 TCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 1215265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | || | | | |||||||| ||||||||||| || Sbjct 12722344 CCACCTCGGAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCA 12722285 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||||| || ||||||| | |||| || | ||| ||||| ||||| Sbjct 12722284 AGAGTCCTCCCATCCTCGAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGA 12722225 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| | || | || | | || | || || | |||||| Sbjct 12722224 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATTATCAATTGTATCCGAACTCTCCAC 12722166 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || ||||||||||| || ||||| |||||||| Sbjct 12722165 CTCCAACGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 12722118 >seq2 Length=30405870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||| || | | | ||||| || || ||||| || || | Sbjct 22653233 CCCCCACGAAGACGAAGTACTAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGCC 22653292 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||| ||||| || || | | | || || | ||| || |||||||| Sbjct 22653293 AGGGTACGTCCGTCCTCAAGTTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCCGGAGGG 22653352 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| |||||||| |||||| ||| | ||||| | | || |||| ||| || Sbjct 22653353 ATACCCTCTTTGTCTTGGATTTTAGCTTTCACATTGT-CAATTGTATCGGAACCCTCAAC 22653411 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||||||||| |||||||||||||| Sbjct 22653412 ATCAAGAGTGATTGTCTTCCCCGTCAGAGTTTCAACAAAAATCTGCAT 22653459 >seq3 Length=27368013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||| || ||||||||||| ||| | || || ||||||||| || || || | Sbjct 289413 GATTCCTTCTGGATGTTGTAGTCAGCT-AGGGTTCGGCCGTCCTCGAGCTGCTTCCCTGC 289355 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 |||| ||||| || ||||| || || || || || ||||| ||| || ||| | Sbjct 289354 GAAGATGAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTCAC 289295 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||||| ||||| ||||| | || | || || || || || |||| Sbjct 289294 ATTG-TCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATAGTCTTCCCCGTTAGGGTTT 289236 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 289235 TGACGAAGATCTGCAT 289220 >seq6 Length=30767194 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||||| ||| || || | ||||||||||||| |||||||| || Sbjct 23848648 CCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 23848589 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | |||||| | ||| ||||||| |||| || | ||| || || || || Sbjct 23848588 AGGGTTCTACCGTCCTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 23848529 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | ||| |||| ||| ||| Sbjct 23848528 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACC 23848469 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || ||||| || ||||||||||| Sbjct 23848468 TCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 23848422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261208970240