Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-16 seq7 87.8 1e-12 seq1 87.8 1e-12 seq6 82.4 5e-11 >seq4 Length=25843236 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| || | || || || || || || || ||||| |||||||| || Sbjct 12722116 CCACCACGCAGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCA 12722057 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | || || | || ||||| || | ||||| | ||| ||||| ||| Sbjct 12722056 AGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 12721997 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| || ||| | || |||||||| |||| || Sbjct 12721996 ATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTCCACT 12721937 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 12721936 TCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCATA 12721889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || || ||||| ||||| || || Sbjct 12721888 CCACCACGCAGCCGGAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCA 12721829 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | || || | || ||||| || | ||||| | ||| ||||| ||| Sbjct 12721828 AGGGTCCTTCCATCCTCGAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 12721769 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| |||||| || ||| | || |||||||| |||| || Sbjct 12721768 ATACCCTCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTCCACT 12721709 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 12721708 TCCAGAGTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCATA 12721661 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| ||| | ||| |||| || | || Sbjct 12760630 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGC 12760689 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | | ||| ||||| ||||| || |||||||| ||| ||| Sbjct 12760690 TTACCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGAATCTTG 12760749 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | | || || || || || || || || || ||| Sbjct 12760750 GCTTTCACATTATCAATGGTATCAGAACTCTCCACCTCCAAAGTTATCGTCTTCCCAGTC 12760809 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| Sbjct 12760810 AGAGTCTTCACAAAGATCTGCAT 12760832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||||||| ||| | | | || || Sbjct 12721186 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCA 12721127 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | |||| | ||| ||||| ||||| ||||||||||| | Sbjct 12721126 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGA 12721067 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || |||| || || | ||| ||||| || Sbjct 12721066 ATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTG 12721007 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || || || ||||| Sbjct 12721006 CCTGTGAGGGTTTTCACGAAGATCTGCAT 12720978 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 12722320 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGC 12722261 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | || | | ||| ||||| ||||| || |||||||| ||| ||| Sbjct 12722260 TTACCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTG 12722201 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | | || || || || || ||||| || || ||| Sbjct 12722200 GCCTTCACATTATCAATTGTATCCGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTC 12722141 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || ||||| Sbjct 12722140 AGAGTCTTCACAAAGATCTGCAT 12722118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || ||||| || || || || |||||||||||| ||| | | | || || Sbjct 12707201 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCATCCTCA 12707142 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | |||| | ||| ||||| ||||| ||||||||||| Sbjct 12707141 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 12707082 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || |||| || || | ||| ||||| || Sbjct 12707081 ATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCGAGGGTGATGGTCTTG 12707022 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| ||||| Sbjct 12707021 CCCGTGAGGGTTTTCACGAAAATCTGCAT 12706993 >seq7 Length=22388614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | || |||||||| | ||||||||||| ||||| ||||||||| |||||| Sbjct 13231761 TCTTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTG 13231702 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| || ||| | || || || ||||| | || || || | || ||| Sbjct 13231701 TCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATG 13231642 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || || || || ||||| || ||||| ||||| || Sbjct 13231641 GTCTTCCCGGTTAGGGTTTTCACGAAAATCTGCATCTT 13231604 >seq1 Length=47851208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || |||||||||||| || ||| |||| || | || Sbjct 26252844 TGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGC 26252903 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | || | ||||| ||||| ||||| || |||||||| || ||| Sbjct 26252904 TTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 26252963 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| || || |||| ||||||||| ||||| || Sbjct 26252964 GCCTTCACATTGTCGATGGTATCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTT 26253023 Query 15154 AGAGTTTTTACAAAAATTTGCATATTTG 15181 || ||||| || || || ||||| |||| Sbjct 26253024 AGGGTTTTCACGAAGATCTGCATGTTTG 26253051 >seq6 Length=30767194 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | |||||| || || ||||| || ||||||||||| Sbjct 23848878 TGCCACCACGAAGCCTGAGCACCAGATGAAGAGTCGACTCTTTCTGGATGTTGTAATCCG 23848819 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | || | || || ||||| || ||||| | |||| | ||| || || | Sbjct 23848818 CCAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAG 23848759 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||| || || ||| | || || ||||| | || | Sbjct 23848758 GAATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCAGAGCTCTCGA 23848699 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || || || ||||| || || || || || || |||||| Sbjct 23848698 CCTCCAAAGTTATTGTCTTCCCTGTAAGGGTCTTCACGAATATCTGCATA 23848649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391163702720