Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq6 100 3e-16 seq4 100 3e-16 seq2 95.1 1e-14 >seq3 Length=27368013 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GC 45171 ||| || ||||| | | ||| || ||||| || |||||||| ||||| || || || || Sbjct 289447 TCCACCACGGAGACGAAGCACCAGGTGCAGAGTCGATTCCTTCTGGATGTTGTAGTCAGC 289388 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | |||| || || | || || |||||| | || | ||||||||||| || | Sbjct 289387 T-AGGGTTCGGCCGTCCTCGAGCTGCTTCCCTGCGAAGATGAGACGTTGCTGGTCTGGGG 289329 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | ||||| || || ||||| || || ||| | || | ||||||||||||||| | Sbjct 289328 GGATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTGTCGGAAGACTCAA 289269 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || | || || || ||||| ||||| || || || |||||| Sbjct 289268 CCTCTAGGGTTATAGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATC 289219 >seq6 Length=30767194 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||||||||| || || ||| || |||| || |||||||| Sbjct 23848396 TGCAAAGTCGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCCAATTGC 23848337 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| | |||||||| || || ||||| || || ||||| || || Sbjct 23848336 TTTCCGGCAAAAATCAACCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTG 23848277 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| || || ||||||||| || || | || || ||||| Sbjct 23848276 GCCTTCA-CGTTGTCGATGGTATCAGAGCTCTCGACTTCTAGGGTTATGGTCTTCCCGGT 23848218 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || |||||||| Sbjct 23848217 TAGGGTTTTGACGAAGATTTGCAT 23848194 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| ||||| ||||||||||| || ||||| | |||| || || |||||||| Sbjct 23848624 TGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCAAGGGTTCTACCGTCCTCCAATTGC 23848565 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | | ||||| || || || || || || || ||||| || || Sbjct 23848564 TTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATCTTG 23848505 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| ||||| |||||| || ||||||| ||||| ||||| Sbjct 23848504 GCCTTCA-CGTTATCAATGGTATCGGAGCTCTCGACCTCCAGAGTAATTGTTTTCCCGGT 23848446 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || ||||| ||||| Sbjct 23848445 TAGGGTTTTGACGAAAATCTGCAT 23848422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || |||||||| ||||| ||||||| | ||| || ||| || Sbjct 19728824 ACAAGATGCAAGGTGGATTCCTTCTGGATGCTATAATCAGCAAGGGTCCTACCATCCTCT 19728765 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | | |||||||| || || || ||||||||||||||| Sbjct 19728764 AGCTGCTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATTCCTTCTTTATCTTGA 19728705 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| |||| ||| || ||| || || | ||||| | || || Sbjct 19728704 ATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTTCACCTTAAGAGTGATAGTCTTT 19728645 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || || || ||||| ||||||||| Sbjct 19728644 CCGGTCAGCGTCTTAACAAATATTTGCATC 19728615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || ||||||||||||||||| || ||| | ||| || |||||||| Sbjct 23848168 TGCAAAGTCGATTCCTTTTGGATATTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAATTGC 23848109 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| | |||||||| || || ||||| || || ||||| ||||| Sbjct 23848108 TTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATTTTG 23848049 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| || || ||||||||| | || | || || ||||| Sbjct 23848048 GCCTTCA-CGTTGTCGATGGTATCAGAGCTCTCGACTTCTAAGGTTATGGTCTTCCCGGT 23847990 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || || ||||| Sbjct 23847989 TAGGGTTTTGACGAAGATCTGCAT 23847966 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || |||||||||||||| | ||| | ||| || Sbjct 23849086 ACAAGATGGAGAGTAGACTCTTTCTGGATATTATAATCTGCAAGGGTACGACCATCCTCA 23849027 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || || | ||||| | ||||||||||| || || || || || |||||| Sbjct 23849026 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCTTGA 23848967 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||||| || ||| || || ||||||| || || Sbjct 23848966 ATCTTAGCTTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCCAGAGTAATGGTCTTC 23848907 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| ||||| Sbjct 23848906 CCAGTCAGGGTCTTCACAAAAATCTGCAT 23848878 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||||||||| ||||| || || ||| | |||| | || |||||||| Sbjct 23847940 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCCAATTGC 23847881 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | | ||||| || || ||||| || || || ||||| || || Sbjct 23847880 TTGCCGGCGAAGATGAGCCTCTGCTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTG 23847821 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||| || ||| || |||||||| | || |||||||| Sbjct 23847820 GCCTTGA-CGTTGTCGATTGTGTCAGAGCTCTCCACCTCGAGAGTGATTGTCTTGCCGGT 23847762 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || | ||||| Sbjct 23847761 TAGGGTTTTGACGAAGACCTGCAT 23847738 >seq4 Length=25843236 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| ||||||||||||||||| ||||||||| | ||| ||| || Sbjct 12761079 CACCAGGTGCAGAGTTGATTCCTTTTGGATGTTATAATCGGCAAGGGTGCGGCCATCCTC 12761138 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| || || ||| | || | | ||||| || || ||||||||||| ||||| || Sbjct 12761139 AAGTTGCTTACCAGCGAAGATTAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTATCCTG 12761198 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||||| || | |||| ||| || || || || || | || | ||| || Sbjct 12761199 AATTTTTGCCTTTACATTATCTATGGTATCCGAGCTTTCAACCTCCAAGGTTATCGTCTT 12761258 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || ||||| |||||||| Sbjct 12761259 CCCAGTTAGTGTCTTGACAAAGATTTGCAT 12761288 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || | || ||| | || ||||||||||| |||||||| Sbjct 7555407 TTCCTCCCCTCAGCCTCAAAACCAAGTGAAGCATCGACTCCTTTTGGATGTTATAATCTG 7555466 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| | ||| |||||||| || || || | ||||||||||| ||||| || | Sbjct 7555467 CAAGAGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATCAATCGTTGTTGGTCAGGAG 7555526 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 7555527 GGATGCCTTCCTTATCCTGAA 7555547 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || |||||||| ||||| ||||| ||||| || || ||| ||| |||| || Sbjct 1214835 TGGAGCGTTGACTCCTTCTGGATGTTATAGTCTGCGAGGGTACGGCCATCCTCCAGCTGC 1214894 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| | |||||||| || || || ||||| || ||||||||||| Sbjct 1214895 TTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGAATTTTG 1214954 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||||||| ||||| ||||| || | || |||||||| Sbjct 1214955 GCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGT 1215013 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 1215014 GAGGGTCTTGACGAAGATCTGCAT 1215037 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGT 45189 ||||| || || ||||| |||||||||||||| ||||| ||| | ||| ||| | Sbjct 12761307 CACTAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCT-AGGGTGCGGCCATCCT 12761365 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || || || || | || | | |||||||| || |||||||| ||||| |||| Sbjct 12761366 CAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGAATGCCCTCTTTGTCTT 12761425 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 | || || |||| || | || | |||||||| ||| || || | ||| | || Sbjct 12761426 GGATCTTAGCCTTGA-CGTTATCAATCGTGTCGGAGCTCTCAACCTCCAAAGTGATGGTC 12761484 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| |||||||| Sbjct 12761485 TTTCCGGTGAGAGTCTTGACAAAGATTTGCAT 12761516 >seq2 Length=30405870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || | |||||| |||||||||||||| | ||| || ||| || Sbjct 22653707 ACAAGATGCAAGGTGGGTTCCTTCTGGATATTATAATCAGCAAGGGTCCTACCATCCTCT 22653766 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | | |||||||| || || || |||| |||||||||| Sbjct 22653767 AGCTGCTTTCCAGCAAAAATAAGCCTCTGCTGGTCAGGAGGGATTCCTTGTTTATCTTGA 22653826 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| |||| ||| || ||| ||| || || ||||| | || || Sbjct 22653827 ATCTTCGCCTTGACATTGTCTATGGTATCCGAACCCTCCACCTCCAGAGTGATAGTCTTT 22653886 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | ||| || ||||| ||||||||| Sbjct 22653887 CCAGTCAAAGTCTTAACAAATATTTGCATC 22653916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | | || ||||||| || |||||||| |||||||||||||| Sbjct 22653458 ATTCCACCACGAAGGCGAAGGACAAGATGCAAAGTAGATTCCTTCTGGATATTATAATCT 22653517 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || |||||||| | || | | ||| ||||| || Sbjct 22653518 GCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGT 22653577 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTT--GATCGCTTCTACGGTGTCGGAAGACT 45288 || || ||||| ||||||||||| ||| || || || ||| ||| || || || Sbjct 22653578 GGGATCCCTTCCTTATCTTGAATCTTTGCCTTCACATTGC--CTATGGTATCAGAGCTCT 22653635 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| | || ||||| || | || || ||||| || ||||| Sbjct 22653636 CCACATCAAGAGTGATGGTCTTGCCCGTCAAGGTCTTAACAAAGATCTGCAT 22653687 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| | |||||||| |||||||||||||| | || | ||| || Sbjct 22653935 ACAAGATGCAAAGCAGATTCCTTCTGGATATTATAATCTGCCAAAGTCCTGCCATCCTCA 22653994 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || |||||||| | || | | ||| ||||| || || || ||||| || |||||| Sbjct 22653995 AGCTGCTTTCCTGCAAAAATAAGCCTTTGTTGGTCAGGTGGGATCCCTTCCTTGTCTTGA 22654054 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| || | |||| ||| || ||| ||| || || ||||| | || || Sbjct 22654055 ATCTTTGCCTTCACATTGTCTATGGTATCCGAACCCTCCACCTCCAGAGTGATAGTCTTT 22654114 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || | || || ||||| ||||||||| Sbjct 22654115 CCAGTCAAAGCCTTGACAAATATTTGCATC 22654144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002115192320