Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 seq4 91.5 1e-13 >seq6 Length=30767194 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| || || ||||| |||||||| ||| ||||| ||||| || ||||| Sbjct 23848192 CCACCTCTCAATCGGAGAACCAAGTGCAAAGTCGATTCCTTTTGGATATTGTAGTCGGCA 23848133 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || |||||||| || ||| | || || || | |||||| || | ||| Sbjct 23848132 AGGGTGCGGCCGTCCTCCAATTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 23848073 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||| || ||||| ||||| || | ||| | | | || || | ||| || || Sbjct 23848072 ATGCCCTCCTTGTCTTGGATTTTGGCCTTCA-CGTTGTCGATGGTATCAGAGCTCTCGAC 23848014 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || || || |||| ||||| |||||||||||||| Sbjct 23848013 TTCTAAGGTTATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 23847966 >seq4 Length=25843236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| || || |||| |||| ||| ||| ||||| || ||||||||||| Sbjct 12761062 CCACCACGCAACCGAAGCACCAGGTGCAGAGTTGATTCCTTTTGGATGTTATAATCGGCA 12761121 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | ||| || || | || |||| | ||||||||| | ||| Sbjct 12761122 AGGGTGCGGCCATCCTCAAGTTGCTTACCAGCGAAGATTAGCCTCTGCTGATCAGGGGGA 12761181 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| || || | | |||||| |||| || | ||| || || | |||||| Sbjct 12761182 ATGCCTTCCTTATC-CTGAATTTTTGCCTTTACAT--TATCTATGGTATCCGAGCTTTCA 12761238 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || || || || |||| || || || ||||| ||||| Sbjct 12761239 ACCTCCAAGGTTATCGTCTTCCCAGTTAGTGTCTTGACAAAGATTTGCAT 12761288 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| || ||||| |||| || || ||||| ||||| || | Sbjct 12760830 CATC-CCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATATTGTAGT 12760888 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | | | |||| |||| || || || |||| || || | |||||| || | Sbjct 12760889 CGGCAAGGGTCCTTCCATCCTCCAGCTGCTTGCCTGCAAATATCAACCTCTGCTGGTCTG 12760948 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 || | || || ||||| ||||| || | | ||| || || |||| ||| Sbjct 12760949 GAGGGATACCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATA--GTATCTGAGCT 12761006 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||| ||||||||||| || || || || |||||||| || ||||| ||||| Sbjct 12761007 TTCCACTTCCAAAGTAATCGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 12761060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347368787155136