Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq192 471 1e-128 seq2 389 1e-103 seq6 84.2 6e-12 >seq192 Length=157790 Score = 471 bits (522), Expect = 1e-128 Identities = 702/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1358 TTTTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1299 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| |||| ||||| || |||| Sbjct 1298 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCAC 1241 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || ||| | || ||||||| Sbjct 1240 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTATGGAAACA 1181 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || ||||| || || || | || |||||||||| Sbjct 1180 ATATTATTTCTGGTGCCATTATTCCTACCTCTGCAGCTATAGGTTTGCACTTTTACCCGA 1121 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | | || || ||| ||||||| || || || ||| |||| ||| Sbjct 1120 TATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 1061 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTTA 26157 | | ||||||||| | || ||||| || | ||| || | |||||||||| || Sbjct 1060 TTCTACACTTCTTACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGAACTTAGTTT 1003 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | || || ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 1002 CCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 943 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || || ||||| | ||||| | || ||||| || ||| ||| || ||||| || || Sbjct 942 TGCTGTTTTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCCCTAGG 883 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 ||||| |||||||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 882 AATCTCCGGTACTTTCAACTTCATGATTGTATTCCAAGCCGAGCACAACATCCTTATGCA 823 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 |||||| || ||| || || ||||| || ||||| || | || ||| ||||||||| Sbjct 822 CCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 763 Query 26398 CGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTA 26457 || ||||| || || | || ||||| ||||| | | || ||| | Sbjct 762 TGGGTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 703 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 || || | || || ||||| ||||| || |||||||| || || || || || || || Sbjct 702 AGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTT 643 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| |||| || || || ||||| ||||| || || |||||| | |||||||| || Sbjct 642 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCT 583 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 ||| ||||||| || || || || ||| | || || | |||||| |||| ||||| || Sbjct 582 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTT 523 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACC 26697 ||| ||||||||||||| || || || || ||||| ||| | | || |||| Sbjct 522 CAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAA 463 Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 ||| ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 462 TACTTGGGCTGATATTATTAACCGCGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 403 Query 26758 TGCTCATAACTTTCCACTTGACTTAGC 26784 ||| ||||| || || || || |||| Sbjct 402 TGCCCATAATTTCCCTCTAGATCTAGC 376 >seq2 Length=30405870 Score = 389 bits (430), Expect = 1e-103 Identities = 686/988 (69%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || ||||| ||| |||| || | |||||||| || || | Sbjct 16144571 TTTTGTAACTGGATAACCAGCACTGAAAACTGTCTTTACATTGGATGGTTTGGTGTTTTG 16144630 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGTT-TTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | | ||| | ||| |||| || | ||||| || |||| Sbjct 16144631 ATGAT-CCCTACTTTATTGACCACAACTTC-TGTACTTATTATTACTTTCATTGCTGCAC 16144688 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||| | || ||||| || || ||| | || ||||||| Sbjct 16144689 CTCCAGTAGATATTGATGGTATTCGTAAACCTGTTTCTGGATCTTTACTTTATGGAAACA 16144748 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || ||||| || || || | || |||||||||| Sbjct 16144749 ATATTATTTCTGGTGCCATTATTCCTACCTCTGCAGCTATAGGTATGCACTTTTACCCGA 16144808 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | | || || ||| ||||||| || || || ||| |||| ||| Sbjct 16144809 TATGGGAAGCGGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAACTAATTG 16144868 Query 26100 TCTTCCACTTCTTAATAGGAGTAGC-AGC-ATATGCAGGGAGACAGTGGGAACTATCTTA 26157 | | ||||||| | | || ||||| || | ||| || | ||||||| | || Sbjct 16144869 TTCTACACTTCTCACTTGGTGTAGCTTGCTACATG--GGTCGTGAGTGGGAGATTAGTTT 16144926 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | || || | | | || ||||| |||||||||| |||| || | | || ||| Sbjct 16144927 CCGTCTGGGTAGGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 16144986 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || || ||||| | ||||| | || ||||| || ||| ||| | |||| | || || Sbjct 16144987 TGCTGTTTTCTTGATATATCCAATTGGTCAAGGAAGCTTTTCTGACGTAATGTCCCTAGG 16145046 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 ||||| |||||||| ||||| ||| | ||||||||||| | || || || || ||||| Sbjct 16145047 AATCTCCGGTACTTTCAACTTCATGATTGTATTCCAAGCTAAGCACAACATCCTTATGCA 16145106 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 |||||| || ||| || | || || || ||||| || | || ||| ||||||||| Sbjct 16145107 CCCATTTCACATGTTAGGCGCAGCCGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 16145166 Query 26398 CGGAAGTTTGGTTACTTCCTCACTT-ATTGCAGAAACGACAGAGGAAGTCTCACAGAATT 26456 || ||||| || ||| || || ||||| | | | | | || ||| Sbjct 16145167 TGGGTCCTTGGTAAC-CCCTAGTTTGATCAGGGAAACCATAAAAAATGAATCTGCTAATG 16145225 Query 26457 ATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACT 26516 | || || | || || ||||| ||||| || |||||||| | || || || || || | Sbjct 16145226 AAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCATAGCCGCTCATGGTTATT 16145285 Query 26517 TTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTC 26576 |||| |||| || || || ||||| ||||| || || ||||| | |||||||| | Sbjct 16145286 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTTGTTCTTTACATTTCTTCC 16145345 Query 26577 TTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCAT 26636 | ||| ||||||| || || || || ||| | || || | |||||| | || ||||| | Sbjct 16145346 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCACTTTAGGTATCAGTACTATGGCTT 16145405 Query 26637 TTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATAC 26696 | ||| ||||||||||||| || || || || ||||| ||| | | || |||| Sbjct 16145406 TCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTA 16145465 Query 26697 CTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTA 26756 ||| ||||||||| | | ||||| | |||||| || | ||||||||||| || |||| Sbjct 16145466 ATACTTGGGCTGATATTATTAACCGCGTTAACCTTGGTATGGAAGTTATGCATGAACGTA 16145525 Query 26757 ATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||||| || || || || |||| Sbjct 16145526 ATGCTCATAATTTCCCTCTAGATCTAGC 16145553 >seq6 Length=30767194 Score = 84.2 bits (92), Expect = 6e-12 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 || || ||||||||||| || || || || ||||| ||| | | || |||| | Sbjct 16007668 AAACTCAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAGGGTCGTGTAATTAAT 16007609 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | |||| |||||||| || | || |||||||| || |||||| Sbjct 16007608 ACTTGGGCTGATATTATTAACCACGCTAACCTTGGTATGGACGTTATGCATGAACGTAAT 16007549 Query 26759 GCTCATAACTTTCCA-CTTGACTTAGCATC 26787 |||||||| |||||| || || |||| || Sbjct 16007548 GCTCATAA-TTTCCATCTAGATGTAGCTTC 16007520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726065463808