Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq192 556 4e-154 seq2 462 7e-126 seq6 86.0 2e-12 seq1 82.4 2e-11 >seq192 Length=157790 Score = 556 bits (616), Expect = 4e-154 Identities = 723/995 (73%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||||||| || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 367 TCAACAGCAGCTAGATCTAGAGGGAAATTATGGGCATTACGTTCATGCATAACTTCCATA 426 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| || ||||| | | ||| |||||||| || | | ||| | ||| Sbjct 427 CCAAGGTTAGCGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 486 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || |||||||| ||||| || || | || |||||||||||| ||| || | | Sbjct 487 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 546 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||||| ||| || | || || ||||||| ||| ||||||||||||||| ||| | Sbjct 547 GCGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAA 606 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 607 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 666 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 667 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 726 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAA--GACTTCCATGCATAGCAGCGAACAAAGCTC 5603 ||||| | || | ||| || || | ||| |||||||||||| ||| | | | Sbjct 727 GTTTCCCTGATCAAACTAGAGGTTACCAAGGAC--CCATGCATAGCACTGAATAGGGAGC 784 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663 | |||||||| ||||| || || | |||||| || || ||||||||||| ||||| || | Sbjct 785 CGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCGG 844 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGA 5723 | |||||||| | ||| ||||| |||||||| ||||| || || |||||||| ||| | Sbjct 845 CTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGGCATACCGTCAGAAA 904 Query 5724 AACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCT 5782 | ||||| || || | || |||| || || || | |||| || || ||||| || ||| Sbjct 905 AGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCT 963 Query 5783 GAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGT 5842 |||||||| || |||||| || ||||| || | | | ||||||||||||| | || Sbjct 964 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1023 Query 5843 CCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCA 5902 |||| ||| || | ||||| | |||||| | || | |||| || || || || Sbjct 1024 CCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCG 1083 Query 5903 TTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATT 5962 ||||| | ||||||||| | || |||||||| || || || ||||| || || || Sbjct 1084 TTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCAAACCTATA 1143 Query 5963 GCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCT 6022 || ||| | || | || ||| || || || || ||||||||||| |||| |||||| Sbjct 1144 GCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGATCCA 1203 Query 6023 GCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATA 6082 | || |||||||| || || || || || ||||| |||||||| | ||| || | ||| Sbjct 1204 GAAACAGGTTCACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAGCAATAATA 1263 Query 6083 AATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAG 6142 ||| ||| ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1264 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1323 Query 6143 AGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | ||||| || | ||||| ||| || Sbjct 1324 AGACGGTTTTCAGTGCTGGTTATCCAGTTACAAAA 1358 >seq2 Length=30405870 Score = 462 bits (512), Expect = 7e-126 Identities = 707/999 (71%), Gaps = 14/999 (1%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| |||||||| || ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 16145562 TCAACAGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 16145503 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| | ||||| | | ||| |||||||| || | | ||| | ||| Sbjct 16145502 CCAAGGTTAACGCGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 16145443 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || |||||||| ||||| || || | || ||||||||||| ||| || | | Sbjct 16145442 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTACTGATACCTAAA 16145383 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||||| ||| || | || || ||||||| ||| ||||||||||||||| || | Sbjct 16145382 GTGGTAAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACAAGAA 16145323 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||||| || | || Sbjct 16145322 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTATGATA 16145263 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | Sbjct 16145262 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTTTATG 16145203 Query 5546 GTTTCACGAATGAGCGAAGAAG----TAACAAG-ACTTCCATGCATAGCAGCGAACAAAG 5600 ||||| | ||| | || || || |||| || |||||||||||| ||| | | Sbjct 16145202 GTTTCCC---TGATCAAACTAGGGGTTACCAAGGAC--CCATGCATAGCACTGAATAGGG 16145148 Query 5601 CTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTT 5660 || |||||||| || || | || | |||||| || || ||||||||||| ||||| | Sbjct 16145147 AGCCGCCGAATACACCGGCTGCGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCT 16145088 Query 5661 CTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCAC 5720 || |||||||| | ||| ||||| |||||||| ||||| || || | ||| | ||| Sbjct 16145087 TAGCTTGGAATACAATCATGAAGTTGAAAGTACCGGAGATTCCTAGGGACATTACGTCAG 16145028 Query 5721 TGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGT 5779 || ||||| || || | || |||| || || || | ||||| | || ||||| || Sbjct 16145027 AAAAGCTTCCTTGACCAATTGGATATATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGA 16144969 Query 5780 GCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGG 5839 ||||||||||| || |||||| || ||| | || | | | |||||| ||||| | Sbjct 16144968 GCTGAATATGCAACAGCAATCCAAGGGCGCCTACCCAGACGGAAACTAATCTCCCACTCA 16144909 Query 5840 CGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCT 5899 || |||| ||| || | ||||| |||||| | || | |||| || || || Sbjct 16144908 CGACCCATGTAGCAAGCTACACCAAGTGAGAAGTGTAGAACAATTAGTTCATAAGGACCA 16144849 Query 5900 CCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959 || ||||| | ||||||||| | || |||||||| || || || ||||| | || Sbjct 16144848 CCGTTGTATAACCATTCATCAACGGAAGCCGCTTCCCATATCGGGTAAAAGTGCATACCT 16144789 Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019 || || ||| | || | || ||| || || || || ||||||||||| |||| |||| Sbjct 16144788 ATAGCTGCAGAGGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAAAGAT 16144729 Query 6020 CCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAAT 6079 || | || |||| ||| || || || || || ||||| |||||||| | ||| | |||| Sbjct 16144728 CCAGAAACAGGTTTACGAATACCATCAATATCTACTGGAGGTGCAGCAATGAAAG-TAAT 16144670 Query 6080 A-TAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCAC 6138 | ||| | ||| ||||| ||| || | | || ||||| || ||||||||||| || | Sbjct 16144669 AATAAGTACAGAAGTTGTGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 16144610 Query 6139 ATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || | ||| | ||||| || | ||||| ||| || Sbjct 16144609 GTAAAGACAGTTTTCAGTGCTGGTTATCCAGTTACAAAA 16144571 >seq6 Length=30767194 Score = 86.0 bits (94), Expect = 2e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5436 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTT 5495 ||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| |||| Sbjct 12498353 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAGGTTT 12498412 Query 5496 CTTCCTCTTGGCCGAATTTATATCC 5520 |||||||||| |||||| | || || Sbjct 12498413 CTTCCTCTTGACCGAATATGTAACC 12498437 Score = 86.0 bits (94), Expect = 2e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| ||| |||| ||| || |||| || |||||||| ||||| ||||| || |||||| Sbjct 16007514 TCAACAGAAGCTACATCTAGATGGAAATTATGAGCATTACGTTCATGCATAACGTCCATA 16007573 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 |||||||| || |||| | | ||| |||||||| || | | ||| | ||| Sbjct 16007574 CCAAGGTTAGCGTGGTTAATAATATCAGCCCAAGTATTAATTACACGACCCTGACTATCA 16007633 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATT 5340 || || || |||||||| ||||| || || || || Sbjct 16007634 ACTACAGATTGATTGAAATTAAAACCATTGAGTTT 16007668 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5436 TAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTT 5495 ||||||| |||||||| | || ||||| || |||||||| || ||||| | ||| |||| Sbjct 12498577 TAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATAATAGGTTT 12498636 Query 5496 CTTCCTCTTGGCCGAATTTATATCC 5520 |||||||||| |||||| | || || Sbjct 12498637 CTTCCTCTTGACCGAATATGTAACC 12498661 >seq1 Length=47851208 Score = 82.4 bits (90), Expect = 2e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6053 ACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGT 6112 ||||| |||||||| | ||| || | |||||| ||| ||||| ||| || | | || Sbjct 26602412 ACTGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGAGGTCAATAAAGTAGGG 26602353 Query 6113 ATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCA 6172 ||||| || ||||||||||| || | || || ||||| | |||||||| | ||||| | Sbjct 26602352 ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTA 26602293 Query 6173 CAGAA 6177 || || Sbjct 26602292 CAAAA 26602288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649251958912