Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 118 8e-22 seq6 98.7 8e-16 seq1 87.8 1e-12 >seq4 Length=25843236 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||| | ||| | | |||| |||| ||||||||||||||| Sbjct 12760641 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCGTCCTCCAGCTGCTTACCGGCAAA 12760700 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| || |||| |||| |||||||||||| |||||| ||| ||| Sbjct 12760701 GATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATT 12760760 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || ||||| || || |||| ||| || || Sbjct 12760761 ATCAATGGTATCAGAACTCTCCACCTCCAAAGTTATCGTCTTCCCAGTCAGAGTCTTCAC 12760820 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 12760821 AAAGATCTGCATC 12760833 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||| | ||| | | | || || | ||||||||||||||| Sbjct 12722309 CTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGCTTACCGGCAAA 12722250 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| || || | |||| |||||||||||| |||||| || ||| Sbjct 12722249 GATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 12722190 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| ||| || || || || |||| ||| || || Sbjct 12722189 ATCAATTGTATCCGAACTCTCCACCTCCAACGTTATGGTCTTGCCAGTCAGAGTCTTCAC 12722130 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 12722129 AAAGATCTGCATC 12722117 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTT 48605 ||||| | |||||| || || ||| ||| |||||||| || || |||| || ||| Sbjct 12721879 AGCCGGAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCAGCAAGGGTCCTT 12721820 Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665 | ||| ||| | |||||| || ||||| |||| | ||| || || | ||||| ||| Sbjct 12721819 CCATCCTCG---AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCC 12721763 Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 |||||||| || || || ||| | | | || || || ||||| |||| Sbjct 12721762 TCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTCCACTTCCAGA 12721703 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 12721702 GTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721662 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTT 48605 || || | |||||| || || ||| ||| |||||||| ||||| |||| || ||| Sbjct 12722107 AGTCGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATGTTGTAGTCAGCAAGGGTCCTT 12722048 Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665 | ||| ||| | |||||| || ||||| |||| | ||| || || | ||||| ||| Sbjct 12722047 CCATCCTCG---AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCC 12721991 Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725 |||||||| || || || ||| | | | || || || ||||| |||| Sbjct 12721990 TCCTTGTCCTGGATTTTGGCCTTAACATTATCAATAGTATCAGAGCTTTCCACTTCCAGA 12721931 Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 12721930 GTAATGGTTTTCCCGGTCAGAGTTTTCACAAATATCTGCAT 12721890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| |||||||||||||| || | || | | Sbjct 12760843 AGACGGAGCACCAAGTGCAGGGTCGACTCCTTTTGAATATTGTAGTCGGCAAGGGTCCTT 12760902 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || |||||||||| | ||| || || | || | |||||| Sbjct 12760903 CCATCCTCCAGCTGCTTGCCTGCAAATATCAACCTCTGCTGGTCTGGAGGGATACCCTCC 12760962 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || || ||| | | || ||||| ||||| |||| ||| Sbjct 12760963 TTGTCCTGGATTTTGGCCTTCACATTGTCAATAGTATCTGAGCTTTCCACTTCCAAAGTA 12761022 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||||||||| ||||| || ||||| Sbjct 12761023 ATCGTCTTCCCAGTCAAAGTTTTCACAAAGATTTGCAT 12761060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || || ||||| |||| || | || Sbjct 1214364 AGACGAAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGG 1214423 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| |||| | || || || | || | |||||| Sbjct 1214424 CCATCCTCCAGCTGCTTTCCTGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCC 1214483 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||||| || Sbjct 1214484 TTGTCCTGGATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAGAGTG 1214543 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||||| || || |||||||||||||| Sbjct 1214544 ATGGTCTTTCCCGTCAGGGTCTTCACAAAAATCTGCAT 1214581 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||||||| || || |||||||| || || || |||| || | || Sbjct 12721651 AGCCGGAGCACCAAATGCAGAGTCGATTCTTTTTGGATGTTATAGTCAGCAAGGGTGCGT 12721592 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||||||||| || || | ||| || || | ||||| ||||||| Sbjct 12721591 CCATCCTCAAGCTGCTTACCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 12721532 Query 48669 TTGTC 48673 ||||| Sbjct 12721531 TTGTC 12721527 >seq6 Length=30767194 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || |||| ||||| || | || ||| ||||| || |||||||| | Sbjct 23848648 CCACCTCTCAGACGCAGAACCAAGTGCAAAGTTGACTCCTTTTGGATGTTGTAATCCGCA 23848589 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | |||| ||||| ||||||||||| || || || | ||| ||||| | ||| Sbjct 23848588 AGGGTTCTACCGTCCTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 23848529 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | | || || ||| ||| Sbjct 23848528 ATACCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCAATGGTATCGGAGCTCTCGACC 23848469 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || | ||||| || ||||||||||| Sbjct 23848468 TCCAGAGTAATTGTTTTCCCGGTTAGGGTTTTGACGAAAATCTGCAT 23848422 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || ||||| ||||| | || | ||| | || || | ||| || |||||||| Sbjct 23849069 CTCTTTCTGGATATTATAATCTGCAAGGGTACGACCATCCTCAAGCTGTTTCCCGGCAAA 23849010 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 |||| | ||| || |||| ||||| | ||||||||||| |||||| ||| ||| Sbjct 23849009 GATCAACCTCTGCTGGTCCGGTGGGATC-CCCTCCTTGTCTTGAATCTTAGCTTTGACAT 23848951 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | || || || ||| ||||||| ||||| || || || |||| || || | Sbjct 23848950 TGTCAATAGTGTCAGAGCTCTCAACCTCCAGAGTAATGGTCTTCCCAGTCAGGGTCTTCA 23848891 Query 48754 CAAAAATCTGCAT 48766 ||||||||||||| Sbjct 23848890 CAAAAATCTGCAT 23848878 >seq1 Length=47851208 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||| | ||| |||| |||| || | |||||| ||||| || Sbjct 26252856 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 26252915 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| || || | ||||| |||||||||||| ||||| || ||| Sbjct 26252916 ATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTG 26252975 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| ||||| | ||||| || || ||||| | ||||| || Sbjct 26252976 TCGATGGTATCAGAGGACTCGACCTCTAGGGTAATGGTCTTACCCGTTAGGGTTTTCACG 26253035 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 26253036 AAGATCTGCAT 26253046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936708606016