Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq2 87.8 2e-12 >seq4 Length=25843236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || || ||||||||||| ||| |||| || Sbjct 12721662 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721721 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| ||||| | ||| ||| || Sbjct 12721722 GATACTATTGATAATGTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 12721781 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| ||||| || | || ||| | || | || || |||||| Sbjct 12721782 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTATAAC 12721841 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || || ||||||||| |||| Sbjct 12721842 ATTCAAAAGGAGTCCACTCTGCACTTGGT 12721870 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| ||||| | || || ||||||||||| ||| |||| || Sbjct 12721890 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721949 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| ||||| ||||| | ||| ||| || Sbjct 12721950 GATACTATTGATAATGTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 12722009 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | |||||||| ||||| || | || ||| | || | || || || ||| Sbjct 12722010 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTACAAC 12722069 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || ||||||||| |||| | || | || || ||||| Sbjct 12722070 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGACTGCGTGGTGGGAT 12722119 >seq2 Length=30405870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 28681 TTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAA 28740 |||| ||||| || || |||||||||||| || ||| |||| |||||||||||||| | Sbjct 22654497 TTATATTTGCTGGAAAGCAATTGGAAGATGGTAGGACTTTGGCTGATTATAACATTCAGA 22654438 Query 28741 AAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||||||| ||||| | || | ||||| | || ||||| Sbjct 22654437 AGGAATCTACTTTGCACCTTGTTCTCCGATTAAGGGGTGGGAT 22654395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425403804552768