Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Prunus_20persica_20[refseq_20GCF_5F000346465.2_202017-02-02] 192 sequences; 227,569,171 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 113 7e-20 seq4 95.1 2e-14 >seq2 Length=30405870 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || | ||||||||||| ||||| || | || || || | ||| Sbjct 22654143 ATGCAAATATTTGTCAAGGCTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 22654084 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| || || ||||| || ||||| || || || || ||| Sbjct 22654083 GATACCATAGACAATGTGAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAA 22654024 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || |||||||| || ||| ||| ||||| ||||||||||| Sbjct 22654023 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAT 22653964 Query 156003 AT 156004 || Sbjct 22653963 AT 22653962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || || || || || | || || || ||| Sbjct 22653687 ATGCAGATCTTTGTTAAGACCTTGACGGGCAAGACCATCACTCTTGATGTGGAGAGCTCT 22653628 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| || || |||||||| ||||| || || || || ||| Sbjct 22653627 GATACCATAGGCAATGTGAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCTGACCAA 22653568 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || |||||||| || ||| ||| ||||| ||||||||||| Sbjct 22653567 CAAAGGCTTATTTTTGCAGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAT 22653508 Query 156003 AT 156004 || Sbjct 22653507 AT 22653506 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || ||||||||||| ||||| || | || || || | ||| Sbjct 22653915 ATGCAAATATTTGTTAAGACTTTGACTGGAAAGACTATCACTCTGGAGGTGGAGGGTTCG 22653856 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || ||||||||| |||| || ||||| || || Sbjct 22653855 GATACCATAGACAATGTCAAGGCGAAGATTCAAGATAAACAAGGAATCCCTCCTGACCAG 22653796 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || |||||||| || ||| || || | | ||||||||| Sbjct 22653795 CAGAGGCTTATTTTTGCTGGAAAGCAGCTAGAGGATGGTAGGACCCTTGCTGATTATAAT 22653736 Query 156003 AT 156004 || Sbjct 22653735 AT 22653734 >seq4 Length=25843236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| |||| || ||||| ||||| | ||||| ||| ||| Sbjct 12721662 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721721 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| || || || || || || || ||||| || Sbjct 12721722 GATACTATTGATAATGTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 12721781 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||||||||| ||| || || | | || ||||| Sbjct 12721782 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGATGGAAGGACCCTTGCTGACTATAAC 12721841 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 12721842 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 12721871 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| |||| || ||||| ||||| | ||||| ||| ||| Sbjct 12721890 ATGCAGATATTTGTGAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAAAGCTCT 12721949 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| || || || || || || || ||||| || Sbjct 12721950 GATACTATTGATAATGTTAAGGCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 12722009 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || ||||||||||| ||| Sbjct 12722010 CAGAGGTTGATCTTTGCAGGCAAGCAGCTCGAGGAT 12722045 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || || || || || || ||| Sbjct 12722118 ATGCAGATCTTTGTGAAGACTCTGACTGGCAAGACCATAACGTTGGAGGTGGAGAGTTCG 12722177 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| || || || || || || ||||| |||||||| || Sbjct 12722178 GATACAATTGATAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 12722237 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||||||||||||||| ||| || ||| | ||||||| || Sbjct 12722238 CAGAGGCTCATCTTTGCCGGTAAGCAGCTCGAGGATGGGAGGACTCTTGCAGATTACAAC 12722297 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 12722298 ATTCAGAAGGAGTCTACCCTTCA 12722320 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||| || || || || || || || || |||| Sbjct 12760832 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACGATAACTTTGGAGGTGGAGAGTTCT 12760773 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || ||||| || || ||||| ||||| || || Sbjct 12760772 GATACCATTGATAATGTGAAAGCCAAGATTCAAGACAAGGAGGGCATTCCTCCGGACCAG 12760713 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||||||| || || || ||| | ||||||| || Sbjct 12760712 CAGAGGCTCATCTTTGCCGGTAAGCAGCTGGAGGACGGGAGGACTCTTGCAGATTACAAC 12760653 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| | || ||||| Sbjct 12760652 ATTCAGAAGGAGTCTACCCTTCA 12760630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870243507200